negex_upload: Upload NegEx

In simon-hans/CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation

Upload NegEx

Description

Prepares and uploads NegEx negation lexicon. It is not absolutely required for CEDARS to function but in practice will improve search accuracy for most applications.

Usage

negex_upload(
  uri_fun,
  user,
  password,
  host,
  replica_set,
  port,
  database,
  selected_model_path = NA
)

Arguments

uri_fun	Uniform resource identifier (URI) string generating function for MongoDB credentials.
user	MongoDB user name.
password	MongoDB user password.
host	MongoDB host server.
replica_set	MongoDB replica set, if indicated.
port	MongoDB port.
database	MongoDB database name.
selected_model_path	Path to NLP model file.

Value

Confirmation of upload.

Examples

## Not run: 
negex_upload(uri_fun = mongo_uri_standard, user = 'John', password = 'db_password_1234',
host = 'server1234', port = NA, database = 'TEST_PROJECT', NA)

## End(Not run)

simon-hans/CEDARS documentation built on Feb. 14, 2024, 3:16 a.m.