mongo_connect: Connect to MongoDB

In simon-hans/CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation

Connect to MongoDB

Description

Basic function used by CEDARS to connect to MongoDB instance. Wraps mongo() from mongolite.

Usage

mongo_connect(
  uri_fun,
  user,
  password,
  host,
  replica_set,
  port,
  database,
  mongo_collection
)

Arguments

uri_fun	Uniform resource identifier (URI) string generating function for MongoDB credentials.
user	MongoDB user name.
password	MongoDB user password.
host	MongoDB host server.
replica_set	MongoDB replica set, if indicated.
port	MongoDB port.
database	MongoDB database name.
mongo_collection	MongoDB collection; if NA, will connect to DB itself.

simon-hans/CEDARS documentation built on Feb. 14, 2024, 3:16 a.m.