Files in simrvprojects/SimRVSequences
Simulate Genetic Sequence Data for Pedigrees
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/EXhaps.R
R/EXmuts.R
R/SNVdata_methods.R
R/SlimFunctions.R
R/check_functions.R
R/choose_gameteFunctions.R
R/combine_exons.R
R/hg_apopPath.R
R/hg_exons.R
R/identifyPathwaySNVs.R
R/marker_map_functions.R
R/sim_StudySeqFunctions.R
R/sim_gameteFunctions.R
R/sim_seqFunctions.R
R/study_peds.R
R/study_seq_methods.R
R/utility_Functions.R
R/vcf_functions.R
README.Rmd
README.md
SimRVSequences.Rproj
cran-comments.md
data-raw/VignetteTimingData.R
data-raw/VignetteTimingNumPedEval.R
data-raw/VignetteTimingTable.R
data-raw/create_study_peds.R
data-raw/format_SNV_data.R
data-raw/format_sample_data.R
data-raw/test_observed_kinship.R
data-raw/test_recombination_frequency.R
data-raw/time_peds.rdata
data/EXhaps.rdata
data/EXmuts.rdata
data/hg_apopPath.RData
data/hg_exons.RData
data/study_peds.rdata
man/EXhaps.Rd
man/EXmuts.Rd
man/SNVdata.Rd
man/affected_allele_count.Rd
man/affected_onlyPed.Rd
man/assign_gen.Rd
man/check_SNV_map.Rd
man/check_ped.Rd
man/check_peds.Rd
man/combine_exons.Rd
man/combine_exons_by_chrom.Rd
man/combine_identicalmutations.Rd
man/condition_haplos_no_cSNV.Rd
man/convert_BP_to_cM.Rd
man/convert_CM_to_BP.Rd
man/create_chrom_map.Rd
man/create_slimMap.Rd
man/extract_tempIDs.Rd
man/famStudy.Rd
man/find_no_cSNV_rows.Rd
man/genos2sparseMatrix.Rd
man/get_SMindex_by_person.Rd
man/get_parOffInfo.Rd
man/hg_apopPath.Rd
man/hg_exons.Rd
man/identify_pathwayRVs_byChrom.Rd
man/identify_pathwaySNVs.Rd
man/is.SNVdata.Rd
man/is.famStudy.Rd
man/is_int.Rd
man/is_odd.Rd
man/load_1KG.Rd
man/reMap_mutations.Rd
man/read_slim.Rd
man/reconstruct_fromHaplotype.Rd
man/reduce_to_events.Rd
man/remove_allWild.Rd
man/resample.Rd
man/sim_FGenos.Rd
man/sim_RVstudy.Rd
man/sim_chiasmataPositions.Rd
man/sim_gameteFormation.Rd
man/sim_gameteInheritance.Rd
man/sim_haploidFormation.Rd
man/sim_seq.Rd
man/study_peds.Rd
man/summary.famStudy.Rd
tests/testthat.R
tests/testthat/test_affected_onlyPed.R
tests/testthat/test_assign_gen.R
tests/testthat/test_combine_identicalmutations.R
tests/testthat/test_create_chrom_map.R
tests/testthat/test_ger_parOffInfo.R
tests/testthat/test_reMap_mutations.R
tests/testthat/test_reconstruct_fromHaplotype.R
tests/testthat/test_reduce_to_events.R
tests/testthat/test_remove_allWild.R
tests/testthat/test_sim_RVstudy.R
tests/testthat/test_sim_chiasmataPositions.R
tests/testthat/test_sim_gameteFormation.R
tests/testthat/test_sim_gameteInheritance.R
tests/testthat/test_sim_haploidFormation.R
vignettes/SimRVSequences.Rmd
vignettes/TimingPlot.png
vignettes/examplePed.png
vignettes/flowchart.png
vignettes/singlechromgametes.png
