study_peds: Example pedigrees
In simrvprojects/SimRVSequences: Simulate Genetic Sequence Data for Pedigrees

Description Usage Format References

This data set contains ped data for five ascertiained pedigrees. The ascertained pedigrees were simulated by the sim_RVped function, which is included with the R package SimRVPedigree.

1	data(study_peds)

A data frame with 77 rows and 15 variables:

FamID: Family identification number.
ID: Individual identification number.
sex: Sex identification variable: sex = 0 for males, and sex = 1 females.
dadID: Identification number of father
momID: Identification number of mother
affected: disease-affection status: affected = TRUE if individual has developed disease, and FALSE otherwise.
DA1: Paternally inherited allele at the familial disease locus: DA1 = 1 if the casual variant is inherited, and 0 otherwise.
DA2: Maternally inherited allele at the familial disease locus: DA2 = 1 if the casual variant is inherited, and 0 otherwise.
birthYr: The individual's birth year.
onsetYr: The individual's year of disease onset, when applicable, and NA otherwise.
deathYr: The individual's year of death, when applicable, and NA otherwise.
RR: The subject's relative-risk of disease
available: Availability status: available = TRUE if individual is recalled by the proband, and FALSE if not recalled or a marry-in.
Gen: The individual's generation number relative to the eldest pedigree founder. That is, the seed founder will have Gen = 1, his or her offspring will have Gen = 2, etc.
proband: Proband identification variable: proband = TRUE if the individual is the proband, and FALSE otherwise.

Christina Nieuwoudt and Jinko Graham (2018).SimRVPedigree:Simulate Pedigrees Ascertained for a Rare Disease.R package version 0.3.0.https://CRAN.R-project.org/package=SimRVPedigree.

simrvprojects/SimRVSequences documentation built on March 12, 2020, 1:33 a.m.