affected_allele_count: Determine total number of alleles shared by affecteds in a...

Description Usage Arguments Value

View source: R/study_seq_methods.R

Description

Determine total number of alleles shared by affecteds in a family

Usage

1
affected_allele_count(ped_haps, hap_map, ped_file)

Arguments

ped_haps

sparse matrix. The familial haplotype data.

hap_map

data frame. Mapping data: maps individuals in ped_file to the haplotypes in ped_haps.

ped_file

data frame. Pedigree file, a for single family; i.e. not an entire study of ped files.

Value

A list of sharing counts, in the same order as the SNVs in ped_haps.


simrvprojects/SimRVSequences documentation built on Jan. 2, 2020, 4:26 p.m.