EXmuts: Example Mutations dataset
In simrvprojects/SimRVSequences: Simulate Genetic Sequence Data for Pedigrees

Description Usage Format Details See Also

This data set catalogs the 500 single-nucleotide variants contained in the EXhaps dataset. This dataset is intended to accompany the EXhaps dataset; each row of EXmuts describes a column (i.e. SNV) in EXhaps.

EXmuts

A data set with 500 rows and 6 variables:

colID: Numeric. The corresponding column number of the SVN in the EXhaps dataset.
chrom: Numeric. The chromosome number.
position: Numeric. The location of the SNV on the chromosome, in base pairs.
afreq: Numeric. The derived allele frequency of the SNV.
marker: Character. The names of the genes contained in the combined exon.
pathwaySNV: Logical. Indicates if the SNV is located within the pathway.

Together, the EXmuts and EXhaps datasets represent example output of the SNVdata object returned by the read_slim function. The EXhaps data set represents the sparse matrix Haplotypes returned by read_slim, and the EXmuts data set represents the Mutations data frame returned by read_slim. This toy data set, used primarily for demonstration, contains 50 SNVs which were randomly sampled from genes in the apoptosis sub-pathway, and 450 SNVs sampled from outside the pathway.