Files in sjessa/cytokit
A toolkit for analyzing single cell RNA-seq data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/MarkerSelection.R
R/cellCyclePlot.R
R/comparisons_with_markers.R
R/cytokit.R
R/data.R
R/expression_correlation.R
R/feature_plots.R
R/genes.R
R/labelTSNEClusters.R
R/monocle.R
R/summarise.R
R/utils.R
R/utils_plotting.R
R/utils_tidyeval.R
R/visualization.R
README.md
cytokit.Rproj
data-raw/get_cell_cycle_whitfield_2002.R
data-raw/get_data.R
data-raw/get_data_abcam_neuronal_markers.R
data/abcam.neuronal.markers.rda
data/cell.cycle.genes.whitfield.2002.rda
data/cell.cycle.genes.whitfield.2012.rda
data/hg.genes.rda
data/hg2mm.genes.rda
data/markers_pbmc.rda
data/mm.genes.rda
data/mm2hg.genes.rda
data/pbmc.rda
man/abcam.neuronal.markers.Rd
man/addEmbedding.Rd
man/addLabels.Rd
man/annotateMarkers.Rd
man/cell.cycle.genes.whitfield.2002.Rd
man/cellCyclePlot.Rd
man/clusterCenters.Rd
man/constrainScale.Rd
man/convertGenesBetweenSpeciesHomologs.Rd
man/convertGenesBetweenSymbolsAndID.Rd
man/correlateExpression.Rd
man/cytokit.Rd
man/drLims.Rd
man/ensembl2symbols.Rd
man/fetchData.Rd
man/filterGenesSample.Rd
man/findGenes.Rd
man/geneName.Rd
man/getAllMarkers.Rd
man/getClusterColours.Rd
man/getVarianceExplained.Rd
man/ggColours.Rd
man/heatmapPercentMarkerOverlap.Rd
man/hg2mm.Rd
man/highlight.Rd
man/labelTSNEClusters.Rd
man/meanClusterExpression.Rd
man/meanGeneExpression.Rd
man/meanMarkerExpressionPerCell.Rd
man/mm2hg.Rd
man/noLegend.Rd
man/noTicks.Rd
man/pairwiseVln.Rd
man/pbmc.Rd
man/percentMarkerOverlap.Rd
man/percentilesMarkerExpression.Rd
man/plotDR.Rd
man/rotateX.Rd
man/selectMarkersRF.Rd
man/seurat_to_monocle.Rd
man/symbols2ensembl.Rd
man/theme_min.Rd
man/tidyeval.Rd
man/tsneByMeanMarkerExpression.Rd
man/tsneByPercentileMarkerExpression.Rd
man/tsne_plot_clusters_highlighted.Rd
man/tsne_plot_clusters_highlighted_with_pseudotime.Rd
man/vln.Rd
man/vlnGrid.Rd
man/whichCells.Rd
tests/testthat.R
tests/testthat/test-comparisons.R
tests/testthat/test-correlation.R
tests/testthat/test-genes.R
tests/testthat/test-plotting_utils.R
tests/testthat/test-summarise.R
tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/cytokit.Rmd
