tsne_plot_clusters_highlighted_with_pseudotime: Draws a tSNE plot with a pseudotime gradient in the selected...
In sjessa/cytokit: A toolkit for analyzing single cell RNA-seq data
Description
Usage
Arguments
Value
Author(s)
Description
Draws a tSNE plot with a pseudotime gradient in the selected clusters.
Usage
1
2
tsne_plot_clusters_highlighted_with_pseudotime(seurat, monocle,
selected_clusters, legend = TRUE)
Arguments
seurat
Seurat object to convert to a Monocle (CellDataSet) object.
monocle
Monocle (CellDataSet) object with pseudotime data.
selected_clusters
Selected clusters in Seurat object. Full names of clusters must be given.
legend.
Boolean. Display legend or not.
Value
A ggplot2 object.
Author(s)
Alexis Blanchet-Cohen
sjessa/cytokit documentation built on Feb. 10, 2020, 7:58 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
Description
Draws a tSNE plot with a pseudotime gradient in the selected clusters.
Usage
1 2 | tsne_plot_clusters_highlighted_with_pseudotime(seurat, monocle,
selected_clusters, legend = TRUE)
|
Arguments
seurat |
Seurat object to convert to a Monocle (CellDataSet) object. |
monocle |
Monocle (CellDataSet) object with pseudotime data. |
selected_clusters |
Selected clusters in Seurat object. Full names of clusters must be given. |
legend. |
Boolean. Display legend or not. |
Value
A ggplot2 object.
Author(s)
Alexis Blanchet-Cohen
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.