Files in skiptoniam/ecomix
Fitting Finite Mixture Models to Ecological Data

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/data_prep-class.R R/package.R R/regional_mix-class.R R/regional_mix_s3-class.R R/species_mix-class.R R/species_mix_s3-class.R R/zzz.R README.Rmd README.md
codecov.yml
docs/404.html
docs/LICENSE-text.html
docs/_config.yml
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docs/articles/RCP-example.html
docs/articles/RCP-example_files/accessible-code-block-0.0.1/empty-anchor.js
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docs/articles/RCP-example_files/header-attrs-2.7/header-attrs.js
docs/articles/SAM-example.html
docs/articles/SAM-example_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/SAM-example_files/figure-html/archetype predictions-1.png
docs/articles/SAM-example_files/figure-html/env plots-1.png
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docs/articles/SAM-example_files/header-attrs-2.7/header-attrs.js
docs/articles/index.html
docs/authors.html
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docs/docsearch.css
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docs/index.html
docs/link.svg
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docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/readme.html
docs/reference/AIC.regional_mix.html
docs/reference/AIC.species_mix.html
docs/reference/BIC.regional_mix.html
docs/reference/BIC.species_mix.html
docs/reference/Rplot001.png
docs/reference/coef.regional_mix.html
docs/reference/coef.species_mix.html
docs/reference/cooks.distance.html
docs/reference/data_prep.html
docs/reference/ecomix-package.html
docs/reference/ecomix.html
docs/reference/effectPlotData.html
docs/reference/extractAIC.regional_mix.html
docs/reference/figures/drawing.svg
docs/reference/figures/logo.png
docs/reference/figures/logo.svg
docs/reference/index.html
docs/reference/logLik.regional_mix.html
docs/reference/logLik.species_mix.html
docs/reference/plot.regional_mix.html
docs/reference/plot.regional_mix.sampling.html
docs/reference/plot.regional_mix_stab.html
docs/reference/plot.species_mix.html
docs/reference/plot.species_mix.multifit.html
docs/reference/plot.species_mix_effectPlotData-1.png
docs/reference/plot.species_mix_effectPlotData.html
docs/reference/predict.regional_mix.html
docs/reference/predict.species_mix.html
docs/reference/print.regional_mix.html
docs/reference/print.species_mix.html
docs/reference/regional_mix-class.html
docs/reference/regional_mix.bootstrap.html
docs/reference/regional_mix.fit.html
docs/reference/regional_mix.html
docs/reference/regional_mix.simulate.html
docs/reference/regional_mix.species_profile.html
docs/reference/regional_mix_boot.html
docs/reference/residuals.regional_mix.html
docs/reference/residuals.species_mix.html
docs/reference/species_mix-class.html
docs/reference/species_mix.bootstrap.html
docs/reference/species_mix.fit.html
docs/reference/species_mix.html
docs/reference/species_mix.multifit.html
docs/reference/species_mix.simulate.html
docs/reference/stability.regional_mix.html
docs/reference/summary.regional_mix.html
docs/reference/summary.species_mix.html
docs/reference/terms.species_mix.html
docs/reference/vcov.regional_mix.html
docs/reference/vcov.species_mix.html
ecomix.Rproj
man/AIC.regional_mix.Rd man/AIC.species_mix.Rd man/BIC.regional_mix.Rd man/BIC.species_mix.Rd man/coef.regional_mix.Rd man/coef.species_mix.Rd man/cooks.distance.Rd man/data_prep.Rd man/ecomix.Rd man/effectPlotData.Rd man/extractAIC.regional_mix.Rd
man/figures/drawing.svg
man/figures/logo.png
man/figures/logo.svg
man/logLik.regional_mix.Rd man/logLik.species_mix.Rd man/plot.regional_mix.Rd man/plot.regional_mix_stab.Rd man/plot.species_mix.Rd man/plot.species_mix.multifit.Rd man/plot.species_mix_effectPlotData.Rd man/predict.regional_mix.Rd man/predict.species_mix.Rd man/print.regional_mix.Rd man/print.species_mix.Rd man/regional_mix.Rd man/regional_mix.bootstrap.Rd man/regional_mix.fit.Rd man/regional_mix.simulate.Rd man/regional_mix.species_profile.Rd man/residuals.regional_mix.Rd man/residuals.species_mix.Rd man/species_mix.Rd man/species_mix.bootstrap.Rd man/species_mix.fit.Rd man/species_mix.multifit.Rd man/species_mix.simulate.Rd man/stability.regional_mix.Rd man/summary.regional_mix.Rd man/summary.species_mix.Rd man/terms.species_mix.Rd man/vcov.regional_mix.Rd man/vcov.species_mix.Rd
src/Tweedie.cc
src/Tweedie.h
src/TweedieDeriv.cc
src/allClasses4.cc
src/myData4.cc
src/myDerivs4.cc
src/myFits4.cc
src/myOptCont4.cc
src/myParms4.cc
src/rcp4.cc
src/rcp4.h
src/rcpPred4.cc
src/rcpPred4.h
src/registerDynamicSymbol.c
src/sam_cpp2.cc
src/sam_cpp2.h
src/sam_cpp_all_classes2.cc
src/sam_cpp_control2.cc
src/sam_cpp_data2.cc
src/sam_cpp_derivs2.cc
src/sam_cpp_fits2.cc
src/sam_cpp_params2.cc
tests/testthat-RCP_S3_class.R tests/testthat-RCP_bernoulli.R tests/testthat-RCP_frontend.R tests/testthat-SAM_S3_class.R tests/testthat-SAM_bernoulli.R tests/testthat-SAM_binomial.R tests/testthat-SAM_data_structure.R tests/testthat-SAM_frontend.R tests/testthat-SAM_ippm.R tests/testthat-SAM_negative_binomial.R tests/testthat-SAM_poisson.R tests/testthat-data_preperation_class.R tests/testthat/test_RCP_S3_class.R tests/testthat/test_RCP_bernoulli.R tests/testthat/test_RCP_frontend.R tests/testthat/test_SAM_S3_class.R tests/testthat/test_SAM_bernoulli.R tests/testthat/test_SAM_binomial.R tests/testthat/test_SAM_data_structure.R tests/testthat/test_SAM_frontend.R tests/testthat/test_SAM_gaussian.R tests/testthat/test_SAM_ippm.R tests/testthat/test_SAM_negative_binomial.R tests/testthat/test_SAM_poisson.R tests/testthat/test_SAM_tweedie.R tests/testthat/test_data_preperation_class.R
vignettes/.gitignore
vignettes/RCP-example.Rmd vignettes/SAM-example.Rmd
vignettes/ecomix_app.bib
vignettes/mee.csl
skiptoniam/ecomix documentation built on Sept. 14, 2023, 6:04 a.m.