analyze_dataset: analyze_dataset

In slzhao/RnaSeqSampleSize: RnaSeqSampleSize

analyze_dataset

Description

A function analyze data set

Usage

analyze_dataset(
  expObj,
  expObjGroups = NULL,
  fdrCut = 0.05,
  subset = 0,
  repN = 2,
  useAllSamplesAsNegativeControl = FALSE
)

Arguments

expObj	RangedSummarizedExperiment object.
expObjGroups	sample groups. Should be a vector of 0 and 1. 0 as control samples.
fdrCut	FDR cutoff to select differential genes.
subset	RangedSummarizedExperiment object.
repN	Number of replications.
useAllSamplesAsNegativeControl	Logic. If true, will Use all samples in the obj as negative control

Value

Figures and a list of result data.

Examples

1

slzhao/RnaSeqSampleSize documentation built on March 24, 2022, 2:21 a.m.