convertIdOneToOne: convertId

In slzhao/RnaSeqSampleSize: RnaSeqSampleSize

convertId

Description

A function to convert ID based on the biomaRt package.

Usage

convertIdOneToOne(
  x,
  dataset = "hsapiens_gene_ensembl",
  filters = "uniprotswissprot",
  attributes = c(filters, "entrezgene_id"),
  verbose = FALSE
)

Arguments

x	the Ids need to be converted.
dataset	Dataset you want to use. To see the different datasets available within a biomaRt you can e.g. do: mart = useMart('ensembl'), followed by listDatasets(mart).
filters	Filters (one or more) that should be used in the query. A possible list of filters can be retrieved using the function listFilters.
attributes	Attributes you want to retrieve. A possible list of attributes can be retrieved using the function listAttributes.
verbose	Logical. Indicate report extra information on progress or not.

Details

A function to convert ID based on the biomaRt package..

Value

A converted ID character with the same order of parameter x.

Examples

x<-c("Q04837","P0C0L4","P0C0L5","O75379","Q13068","A2MYD1")
convertIdOneToOne(x,filters="uniprotswissprot",verbose=TRUE)

slzhao/RnaSeqSampleSize documentation built on March 24, 2022, 2:21 a.m.