get_max_kmer: Calculates maximum kmer for DNA sequence object (DNAString or...
In smaegol/biostrext: Extension to Biostrings
Description
Usage
Arguments
Value
Examples
Description
Calculates maximum kmer for DNA sequence object (DNAString or DNAStringSet)
Usage
1
get_max_kmer(x, k)
Arguments
x
DNAString or DNAStringSet object
mer
kmer size
Value
named vector of max kmer counts with kmer sequences as names
Examples
1
2
get_max_kmer(Biostrings::DNAString("CAGCGATCGTACACGATC"),4)
get_max_kmer(Biostrings::DNAStringSet(c("CAGCGATCGTACACGATC","CAGCGTAGCTAG","CAGCATCACACACAC")),3)
smaegol/biostrext documentation built on May 24, 2019, 7:25 p.m.
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Description Usage Arguments Value Examples
Description
Calculates maximum kmer for DNA sequence object (DNAString or DNAStringSet)
Usage
1 | get_max_kmer(x, k)
|
Arguments
x |
DNAString or DNAStringSet object |
mer |
kmer size |
Value
named vector of max kmer counts with kmer sequences as names
Examples
1 2 | get_max_kmer(Biostrings::DNAString("CAGCGATCGTACACGATC"),4)
get_max_kmer(Biostrings::DNAStringSet(c("CAGCGATCGTACACGATC","CAGCGTAGCTAG","CAGCATCACACACAC")),3)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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