MicroMosquitoFemale: MICRO Female Mosquito Class Definition

In smitdave/MASH: MASH (Modular Analysis and Simulation for Human Health)

Description

This is a female mosquito class definition for MICRO; it inherits (superclass) from MicroMosquito.

Usage

MicroMosquitoFemale

Format

An R6Class generator object

Fields

• ID and Time

  • id: mosquito ID (integer)

  • bDay: time of emergence (numeric)

  • tNow: time of current behavioral state (numeric)

  • tNext: time to next behavioral state change (numeric)

  • genotype: genotype of mosquito (integer)

• State and Location

  • state: current behavioral state of mosquito (character)

    • F: Blood Feeding Search Bout

    • B: Blood Feeding Attempt Bout

    • R: Post-Prandial Resting Bout

    • L: Egg Laying Search Bout

    • O: Egg Laying Attempt Bout

    • S: Sugar Feeding Attempt Bout

    • M: Female Mating Bout

    • E: Estivation Bout

    • D: Death

  • stateNew: next behavioral state of mosquito (see above)

  • inPointSet: class of site (character)

    • f: feeding site FeedingSite

    • l: aquatic habitat AquaticSite

    • s: sugar feeding site SugarSite

    • m: mating site MatingSite

  • ix: index of site (integer)

  • MATURE: mature (logical)

  • ALIVE: alive or dead? (logical)

• Other State Fields

  • lspot: landing spot (character)

    • l: Leave the area

    • r: Reattempt Without Resting

    • v: Rest on vegetation

    • w: Rest on the Outside wall of a structure

    • i: Rest on the Inside wall of a structure

  • damage: wing tattering (numeric)

  • energy: energy reserves (numeric)

  • history: list; see MosquitoFemaleHistory

• Egg Production

  • bmSize: the size of the blood meal, relative to max

  • batch: female eggs in batch

  • eggT: the minimum time before eggs are mature

  • eggP: the mimimum provision for eggs to mature

• Maturation & Reproduction

  • sire: ID of mate

  • energyPreG: pre-gonotrophic energy requirement

  • hostID: the id of the host: -1 zoo, 0 null host, otherwise human ID

• Pathogen Module Specific Fields

  • Pathogen: Module specific Pathogen object

    • PfSI: mosquitoPfSI

Methods

• Constructor

  • new: initialize a new MicroMosquitoFemale object

    • Arguments:

      • arg1: something.

• Getters & Setters

  • get_id:

• Pointers

  • get_FemalePopPointer: get pointer to enclosing MicroMosquitoPopFemale

  • set_FemalePopPointer: set pointer to enclosing MicroMosquitoPopFemale

  • get_MalePopPointer: get pointer to MicroMosquitoPopMale in same enclosing microsimulation Tile MicroTile

  • set_MalePopPointer: set pointer to MicroMosquitoPopMale in same enclosing microsimulation Tile MicroTile

  • get_LandscapePointer: get pointer to Landscape in same enclosing microsimulation Tile MicroTile

  • set_LandscapePointer: set pointer to Landscape in same enclosing microsimulation Tile MicroTile

  • get_HumansPointer: get pointer to HumanPop in same enclosing microsimulation Tile MicroTile

  • set_HumansPointer: set pointer to HumanPop in same enclosing microsimulation Tile MicroTile

  • get_TilePointer: get pointer to enclosing microsimulation Tile MicroTile

  • set_TilePointer: set pointer to enclosing microsimulation Tile MicroTile

smitdave/MASH documentation built on May 30, 2019, 5:02 a.m.