calcLambda_MicroEL4P: Calculate Lambda for EL4P Aquatic Ecology Module
In smitdave/MASH: MASH (Modular Analysis and Simulation for Human Health)
Description
Usage
Arguments
Value
Description
Calculate parameter lambda (daily adult female emergence over entire landscape) required to sustain Plasmodium falciparum transmission at given value of R0 based on
classical Ross-MacDonald assumptions. This is used in EL4P fitting routines and called in EL4P.Parameters such that mean emergence over the landscape will be fitted to this equilibrium value.
Detailed derivations found in https://doi.org/10.1186/1475-2875-3-13
Usage
1
2
calcLambda_MicroEL4P(R0, EIP, lifespan, S, nH, b = 0.55, c = 0.15,
r = 1/38)
Arguments
R0
desired intensity of pathogen transmission
EIP
length of the entomological incubation period
lifespan
average lifespan of mosquito
S
stability index; number of bites on humans over the average mosquito lifespan
nH
number of humans on landscape
b
mosquito to human transmission efficiency
c
human to mosquito transmission efficiency
r
rate of recovery in humans (1/average length of infection)
Value
equilibrium lambda
smitdave/MASH documentation built on May 30, 2019, 5:02 a.m.
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Description Usage Arguments Value
Description
Calculate parameter lambda (daily adult female emergence over entire landscape) required to sustain Plasmodium falciparum transmission at given value of R0 based on
classical Ross-MacDonald assumptions. This is used in EL4P fitting routines and called in EL4P.Parameters such that mean emergence over the landscape will be fitted to this equilibrium value.
Detailed derivations found in https://doi.org/10.1186/1475-2875-3-13
Usage
1 2 | calcLambda_MicroEL4P(R0, EIP, lifespan, S, nH, b = 0.55, c = 0.15,
r = 1/38)
|
Arguments
R0 |
desired intensity of pathogen transmission |
EIP |
length of the entomological incubation period |
lifespan |
average lifespan of mosquito |
S |
stability index; number of bites on humans over the average mosquito lifespan |
nH |
number of humans on landscape |
b |
mosquito to human transmission efficiency |
c |
human to mosquito transmission efficiency |
r |
rate of recovery in humans (1/average length of infection) |
Value
equilibrium lambda
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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