API for smitdave/MASH
MASH (Modular Analysis and Simulation for Human Health)

Global functions
AquaEmergeLambdaPlot_utility Man page Source code
AquaticSite Man page
EL4P Man page
EL4P.Landscape.Fit Man page Source code
EL4P.Mesh.Fit Man page Source code
EL4P.Parameters Man page Source code
EL4P__G2K_GEL4P Source code
EL4P__addEggs Source code
EL4P__burnIn_GEL4P Source code
EL4P__checkDX_GEL4P Source code
EL4P__ctor Source code
EL4P__get_allGenotypes Source code
EL4P__get_alpha Source code
EL4P__get_genotypeIx Source code
EL4P__get_numGenotypes Source code
EL4P__get_p Source code
EL4P__get_psi Source code
EL4P__get_specificLambda Source code
EL4P__get_totalLambda Source code
EL4P__oneStep Source code
EL4P__oneStep_GEL4P Source code
EL4P__reset Source code
EL4P__set_alpha Source code
EL4P__set_p Source code
EL4P__set_pop Source code
EL4P__set_psi Source code
EggQ Man page
EggQ__add_EggQ Source code
EggQ__clear_EggQ Source code
EggQ__clear_EggQTime Source code
EggQ__ctor Source code
EggQ__get_EggQ Source code
EggQ__get_EggQTime Source code
EggQ__get_N Source code
EggQ__set_N Source code
EggQ__track_EggQ Source code
FeedingSite Man page
HistoryGeneric Man page
HistoryGeneric__ctor Source code
HistoryGeneric__get_history Source code
HistoryGeneric__track_history Source code
HistoryTravel Man page
HistoryTravel__ctor Source code
HistoryTravel__get_travelHistory Source code
HistoryTravel__track_travel Source code
Human Man page
HumanEventQ Man page
HumanEventQ__addEvent2Q Source code
HumanEventQ__ctor Source code
HumanEventQ__firstEvent Source code
HumanEventQ__firstTime Source code
HumanEventQ__get_EventQ Source code
HumanEventQ__get_queueN Source code
HumanEventQ__rmFirstEventFromQ Source code
HumanEventQ__rmTagFromQ Source code
HumanPop Man page
HumanPop.Parameters Man page Source code
HumanPop_get_PfMOI_PAR Man page Source code
HumanPop_get_PfMOI_history Man page Source code
HumanPop_get_PfSI_PAR Man page Source code
HumanPop_get_PfSI_history Man page Source code
HumanPop_set_PfMOI_PAR Man page Source code
HumanPop_set_PfSI_PAR Man page Source code
HumanPop_set_humanPfMOI Man page Source code
HumanPop_set_humanPfSI Man page Source code
Human_get_PfMOI_PAR Man page Source code
Human_get_PfSI_PAR Man page Source code
Human_set_humanPfMOI Man page Source code
Human_set_humanPfSI Man page Source code
ImagoQ Man page
ImagoQ__add_ImagoQ Source code
ImagoQ__clear_ImagoQ Source code
ImagoQ__clear_ImagoQTime Source code
ImagoQ__ctor Source code
ImagoQ__get_ImagoQ Source code
ImagoQ__get_ImagoQTime Source code
ImagoQ__get_N Source code
ImagoQ__set_N Source code
ImagoQ__track_ImagoQ Source code
K2psi_MicroEL4P Man page Source code
Landscape Man page
Landscape.Aqua.Parameters Man page Source code
Landscape.Feeding.Parameters Man page Source code
Landscape.Parameters Man page Source code
MACRO.Humans.Setup Man page Source code
MACRO.MosquitoPop.Parameters Man page Source code
MACRO.Patch.Emerge.Setup Man page Source code
MACRO.Patch.Parameters Man page Source code
MACRO.Tile.Parameters Man page Source code
MASH Man page
MASH-package Man page
MBITES.BRO.Cohort.Setup Man page Source code
MBITES.BRO.Parameters Man page Source code
MBITES.BRO.Setup Man page Source code
MBITES.Cohort.Setup Man page Source code
MBITES.FULL.Parameters Man page Source code
MBITES.Generic.Setup Man page Source code
MICRO.EL4P.Setup Man page Source code
MICRO.Emerge.Setup Man page Source code
MICRO.Humans.Setup Man page Source code
MacroHumanPop_get_patchID Man page Source code
MacroHumanPop_set_patchID Man page Source code
MacroHuman_add2Q_Bites Man page Source code
MacroHuman_add2Q_returnHome Man page Source code
MacroHuman_add2Q_takeTrip Man page Source code
MacroHuman_event_returnHome Man page Source code
MacroHuman_event_takeTrip Man page Source code
MacroHuman_expectedBites Man page Source code
MacroHuman_get_MosquitoPointer Man page Source code
MacroHuman_get_PatchesPointer Man page Source code
MacroHuman_get_TilePointer Man page Source code
MacroHuman_get_location Man page Source code
MacroHuman_get_myEIR Man page Source code
MacroHuman_get_patchID Man page Source code
MacroHuman_get_travel Man page Source code
MacroHuman_get_travelHistoryHuman Man page Source code
MacroHuman_get_travelHistoryHumanPop Man page Source code
MacroHuman_go_Patch Man page Source code
MacroHuman_init_travel Man page Source code
MacroHuman_json_travelHistory Man page Source code
MacroHuman_queueInfectiousBites Man page Source code
MacroHuman_returnHome Man page Source code
MacroHuman_set_MosquitoPointer Man page Source code
MacroHuman_set_PatchesPointer Man page Source code
MacroHuman_set_TilePointer Man page Source code
MacroHuman_set_location Man page Source code
MacroHuman_set_myEIR Man page Source code
MacroHuman_set_patchID Man page Source code
MacroHuman_set_travel Man page Source code
MacroHuman_sumKappa_PfMOI Man page Source code
MacroHuman_sumKappa_PfSI Man page Source code
MacroHuman_takeTrip Man page Source code
MacroHuman_updateKappa Man page Source code
MacroMosquitoPop Man page
MacroPatch Man page
MacroRM.Parameters Source code
MacroRM.Setup Source code
MacroRM_lifeCycle_RM Source code
MacroRM_migrationIn_RM Source code
MacroRM_migrationOut_RM Source code
MacroTile Man page
MicroKernelPlot_utility Man page Source code
MicroKernel_DistanceMat Man page Source code
MicroKernel_PowerKernel Man page Source code
MicroKernel_SampleMvOb_MicroMosquitoPopFemale Man page Source code
MicroKernel_exactAll Man page Source code
MicroKernel_exactMvOb Man page Source code
MicroKernel_moveMe_BRO Man page Source code
MicroKernel_moveMe_BROM Man page Source code
MicroKernel_moveMe_FULL Man page Source code
MicroKernel_moveMe_Male Man page Source code
MicroKernel_prSort Man page Source code
MicroLandscapePlot_utility Man page Source code
MicroMosquitoFemale Man page
MicroMosquitoMale Man page
MicroMosquitoPop.Setup Man page Source code
MicroMosquitoPopFemale_clear_pop Man page Source code
MicroMosquitoPopFemale_extend_pop Man page Source code
MicroMosquitoPopFemale_push_pop Man page Source code
MicroMosquitoPopFemale_update_nullPop Man page Source code
MicroMosquitoPopFemale_update_pop Man page Source code
MicroMosquitoPopFemale_which_alive Man page Source code
MicroTile Man page
MosquitoFemaleHistory Man page
MosquitoFemaleHistory__calcBionomics Source code
MosquitoFemaleHistory__ctor Source code
MosquitoFemaleHistory__exportHistory Source code
MosquitoFemaleHistory__historyFeed Source code
MosquitoFemaleHistory__historyInit Source code
MosquitoFemaleHistory__historyTrack Source code
PfMOI.Parameters Man page Source code
PfMOI.Setup Man page Source code
PfMOI_increment_PfID Man page Source code
PfMOI_ttClearPf_Independent Man page Source code
PfMOI_ttClearPf_Interaction Man page Source code
PfMOI_ttFeverPf Man page Source code
PfMOI_ttGSWanePf Man page Source code
PfMOI_ttInfectionPf Man page Source code
PfMOI_ttPEWanePf Man page Source code
PfMOI_ttSusceptiblePf Man page Source code
PfMOI_ttTreatPf Man page Source code
PfSI.Parameters Man page Source code
PfSI.Setup Man page Source code
PfSI_increment_PfID Man page Source code
PfSI_ttClearPf Man page Source code
PfSI_ttFeverPf Man page Source code
PfSI_ttGSWanePf Man page Source code
PfSI_ttInfectionPf Man page Source code
PfSI_ttPEWanePf Man page Source code
PfSI_ttSusceptiblePf Man page Source code
PfSI_ttTreatPf Man page Source code
RiskQ Man page
RiskQ__add_HumanHost Source code
RiskQ__add_OtherHost Source code
RiskQ__clear_HumanHost Source code
RiskQ__ctor Source code
RiskQ__get_HumanHost Source code
RiskQ__get_HumanHostIx Source code
RiskQ__get_N Source code
RiskQ__get_OtherHost Source code
RiskQ__get_nOther Source code
RiskQ__get_pTm Source code
RiskQ__get_w Source code
RiskQ__get_who Source code
RiskQ__push_pTm Source code
RiskQ__push_w Source code
RiskQ__push_who Source code
RiskQ__set_N Source code
RiskQ__set_nOther Source code
SEARCH.MicroKernel.Setup Man page Source code
SimBitePfMOI Man page Source code
SimBitePfMOI.Setup Man page Source code
SimBitePfSI.Setup Man page Source code
SimBite_MeanBites Man page Source code
SimBite_WaitingTime Man page Source code
add2Q_SimBitePfMOI Man page Source code
add2Q_endPfMOI Man page Source code
add2Q_endPfSI Man page Source code
add2Q_endprophylaxisPfMOI Man page Source code
add2Q_endprophylaxisPfSI Man page Source code
add2Q_feverPfMOI Man page Source code
add2Q_feverPfSI Man page Source code
add2Q_gsvaccinatePfMOI Man page Source code
add2Q_gsvaccinatePfSI Man page Source code
add2Q_gswanePfMOI Man page Source code
add2Q_gswanePfSI Man page Source code
add2Q_infectHumanPfMOI Man page Source code
add2Q_infectHumanPfSI Man page Source code
add2Q_pevaccinatePfMOI Man page Source code
add2Q_pevaccinatePfSI Man page Source code
add2Q_pewanePfMOI Man page Source code
add2Q_pewanePfSI Man page Source code
add2Q_treatPfMOI Man page Source code
add2Q_treatPfSI Man page Source code
addCohort_MacroEmerge Man page Source code
addCohort_MicroEL4P Man page Source code
addCohort_MicroEL4PSite Man page Source code
addCohort_MicroEmerge Man page Source code
addCohort_MicroEmergeSite Man page Source code
allocEggQ Man page Source code
allocImagoQ Man page Source code
betaRootA Man page Source code
betaRootB Man page Source code
calcLambda_MicroEL4P Man page Source code
calculateBionomics_utility Man page Source code
colLuminosity_utility Man page Source code
emergingAdults_MacroEmerge Man page Source code
endPfMOI Man page Source code
endPfSI Man page Source code
endprophylaxisPfMOI Man page Source code
endprophylaxisPfSI Man page Source code
event_SimBitePfMOI Man page Source code
event_endPfMOI Man page Source code
event_endPfSI Man page Source code
event_endprophylaxisPfMOI Man page Source code
event_endprophylaxisPfSI Man page Source code
event_feverPfMOI Man page Source code
event_feverPfSI Man page Source code
event_gsvaccinatePfMOI Man page Source code
event_gsvaccinatePfSI Man page Source code
event_gswanePfMOI Man page Source code
event_gswanePfSI Man page Source code
event_infectHumanPfMOI Man page Source code
event_infectHumanPfSI Man page Source code
event_pevaccinatePfMOI Man page Source code
event_pevaccinatePfSI Man page Source code
event_pewanePfMOI Man page Source code
event_pewanePfSI Man page Source code
event_treatPfMOI Man page Source code
event_treatPfSI Man page Source code
extend_PatchesImagoQ Man page Source code
feeding_PfMOI Man page Source code
feeding_PfSI Man page Source code
feverPfMOI Man page Source code
feverPfSI Man page Source code
gammaRates Man page Source code
getEIP_MacroMosquitoPop Man page Source code
get_MicroHumanPop_FemalePopPointer Man page Source code
get_MicroHumanPop_LandscapePointer Man page Source code
get_MicroHumanPop_TilePointer Man page Source code
get_MicroHuman_ActivitySpace Man page Source code
get_MicroHuman_FemalePopPointer Man page Source code
get_MicroHuman_LandscapePointer Man page Source code
get_MicroHuman_TilePointer Man page Source code
get_MicroKernel_movement_BRO Man page Source code
get_MicroKernel_movement_BROM Man page Source code
get_MicroKernel_movement_FULL Man page Source code
get_MicroKernel_movement_Male Man page Source code
get_PatchesEggQ Man page Source code
get_PatchesImagoQ Man page Source code
get_lambda_MicroEmerge Man page Source code
get_season Man page Source code
ggColOffset_utility Man page Source code
ggCol_utility Man page Source code
gsvaccinatePfMOI Man page Source code
gsvaccinatePfSI Man page Source code
gswanePfMOI Man page Source code
gswanePfSI Man page Source code
humanPfMOI Man page
humanPfMOI__add_Infection Source code
humanPfMOI__clear_Infection Source code
humanPfMOI__ctor Source code
humanPfMOI__get_Infection Source code
humanPfMOI__get_MOI Source code
humanPfMOI__get_PfID Source code
humanPfMOI__get_b Source code
humanPfMOI__get_c Source code
humanPfMOI__get_chemoprophylaxis Source code
humanPfMOI__get_damID Source code
humanPfMOI__get_history Source code
humanPfMOI__get_sireID Source code
humanPfMOI__get_tInf Source code
humanPfMOI__push_PfID Source code
humanPfMOI__push_damID Source code
humanPfMOI__push_sireID Source code
humanPfMOI__push_tInf Source code
humanPfMOI__set_MOI Source code
humanPfMOI__set_b Source code
humanPfMOI__set_c Source code
humanPfMOI__set_chemoprophylaxis Source code
humanPfMOI__track_history Source code
humanPfSI Man page
humanPfSI__back_PfID Source code
humanPfSI__ctor Source code
humanPfSI__get_PfID Source code
humanPfSI__get_b Source code
humanPfSI__get_c Source code
humanPfSI__get_chemoprophylaxis Source code
humanPfSI__get_damID Source code
humanPfSI__get_history Source code
humanPfSI__get_infected Source code
humanPfSI__get_sireID Source code
humanPfSI__get_tInf Source code
humanPfSI__push_PfID Source code
humanPfSI__push_damID Source code
humanPfSI__push_sireID Source code
humanPfSI__push_tInf Source code
humanPfSI__set_b Source code
humanPfSI__set_c Source code
humanPfSI__set_chemoprophylaxis Source code
humanPfSI__set_infected Source code
humanPfSI__track_history Source code
importMicroMosquitoHistory_utility Man page Source code
infectHumanPfMOI Man page Source code
infectHumanPfSI Man page Source code
infectiousBite_PfMOI Man page Source code
infectiousBite_PfSI Man page Source code
init_MACRO_PfMOI Man page Source code
init_MACRO_PfSI Man page Source code
init_MICRO_PfMOI Man page Source code
init_MICRO_PfSI Man page Source code
init_MacroTile_PfMOI Man page Source code
init_MacroTile_PfSI Man page Source code
init_MicroHumanPop_ActivitySpace Man page Source code
init_MicroHuman_ActivitySpace Man page Source code
init_Pathogens_MicroMosquitoFemale_PfMOI Man page Source code
init_Pathogens_MicroMosquitoFemale_PfSI Man page Source code
init_Pathogens_MicroMosquitoPopFemale_PfMOI Man page Source code
init_Pathogens_MicroMosquitoPopFemale_PfSI Man page Source code
layEggs_MacroMosquitoPop Man page Source code
lmTest_PfMOI Man page Source code
lmTest_PfSI Man page Source code
makeBigHash Source code
makeBigList Source code
makeData Source code
makeFeedData Source code
makeLambda_Macro Man page Source code
makeLambda_MicroEmerge Man page Source code
manage_PatchesImagoQ Man page Source code
mbitesBRO_BloodMeal Man page Source code
mbitesBRO_Pop_MBITES Man page Source code
mbitesBRO_boutB Man page Source code
mbitesBRO_boutO Man page Source code
mbitesBRO_boutR Man page Source code
mbitesBRO_cohort_humanEncounter Man page Source code
mbitesBRO_cohort_oneMosquito_MBITES Man page Source code
mbitesBRO_cohort_simCohort Man page Source code
mbitesBRO_enterHouse Man page Source code
mbitesBRO_get_MySiteType Man page Source code
mbitesBRO_get_WTS Man page Source code
mbitesBRO_get_restHaz Man page Source code
mbitesBRO_get_surviveFlightProb Man page Source code
mbitesBRO_humanEncounter Man page Source code
mbitesBRO_landingSpot Man page Source code
mbitesBRO_layEggs_EL4P Man page Source code
mbitesBRO_layEggs_Emerge Man page Source code
mbitesBRO_newSpot Man page Source code
mbitesBRO_oneBout Man page Source code
mbitesBRO_oneMosquito_MBITES Man page Source code
mbitesBRO_timingExponential Man page Source code
mbitesBRO_zooEncounter Man page Source code
mbitesCohort_chooseHost Man page Source code
mbitesGeneric_chooseHost Man page Source code
mbitesGeneric_isActive Man page Source code
mbitesGeneric_isAlive Man page Source code
mbitesGeneric_pEnergySurvival Man page Source code
mbitesGeneric_pOverFeed Man page Source code
mbitesGeneric_pReFeed Man page Source code
mbitesGeneric_pSenesce Man page Source code
mbitesGeneric_pSugarBout Man page Source code
mbitesGeneric_pTatter Man page Source code
mbitesGeneric_rBatchSizeBms Man page Source code
mbitesGeneric_rBatchSizeNorm Man page Source code
mbitesGeneric_rBloodMealSize Man page Source code
mbitesGeneric_rEggMaturationTimeNorm Man page Source code
mbitesGeneric_rEggMaturationTimeOff Man page Source code
mbitesGeneric_rTatterSize Man page Source code
mbitesGeneric_surviveFlight Man page Source code
mbitesGeneric_surviveResting Man page Source code
meshK_MicroEL4P Man page Source code
mosquitoPfMOI Man page
mosquitoPfMOI__add_Infection Source code
mosquitoPfMOI__ctor Source code
mosquitoPfMOI__get_Infection Source code
mosquitoPfMOI__get_InfectionEIP Source code
mosquitoPfMOI__get_InfectionIx Source code
mosquitoPfMOI__get_MOI Source code
mosquitoPfMOI__get_PfID Source code
mosquitoPfMOI__get_damID Source code
mosquitoPfMOI__get_sireID Source code
mosquitoPfMOI__get_tInf Source code
mosquitoPfMOI__push_PfID Source code
mosquitoPfMOI__push_damID Source code
mosquitoPfMOI__push_sireID Source code
mosquitoPfMOI__push_tInf Source code
mosquitoPfMOI__set_MOI Source code
mosquitoPfMOI__which_EIP Source code
mosquitoPfSI Man page
mosquitoPfSI__ctor Source code
mosquitoPfSI__get_PfID Source code
mosquitoPfSI__get_damID Source code
mosquitoPfSI__get_infected Source code
mosquitoPfSI__get_sireID Source code
mosquitoPfSI__get_tInf Source code
mosquitoPfSI__set_PfID Source code
mosquitoPfSI__set_damID Source code
mosquitoPfSI__set_infected Source code
mosquitoPfSI__set_sireID Source code
mosquitoPfSI__set_tInf Source code
newEgg Man page Source code
newImago Man page Source code
onAttach Source code
oneDay_MacroEmerge Man page Source code
oneDay_RM Man page Source code
oneHuman Source code
oneStep_MicroEL4P Man page Source code
oneStep_MicroEL4PSite Man page Source code
oneStep_MicroEmerge Man page Source code
oneStep_MicroEmergeSite Man page Source code
ovipositionEq_oneHistory_utility Man page Source code
ovipositionEq_utility Man page Source code
pevaccinatePfMOI Man page Source code
pevaccinatePfSI Man page Source code
pewanePfMOI Man page Source code
pewanePfSI Man page Source code
plot_PfSI Man page Source code
plot_PfSIOneTrajectory Man page Source code
pointsClustered Man page Source code
pointsLattice Man page Source code
pointsOverdispersed Man page Source code
pointsPoisson Man page Source code
probeHost_PfMOI Man page Source code
probeHost_PfSI Man page Source code
probeHost_SimBitePfMOI Man page Man page Source code Source code
probing_PfMOI Man page Source code
probing_PfSI Man page Source code
psi2K_cf_MicroEL4P Man page Source code
psi2K_plot_MicroEL4P Man page Source code
psiFit_MicroEL4P Man page Source code
queueBitesNegBinom_SimBitePfSI Man page Source code
queueBites_SimBitePfMOI Man page Source code
queueVaccination_SimBitePfMOI Man page Source code
rdtTest_PfMOI Man page Source code
rdtTest_PfSI Man page Source code
run2eq_MicroEL4P Man page Source code
sampleIx_utility Man page Source code
set_FemalePop_MicroTile Man page Source code
set_MicroHumanPop_FemalePopPointer Man page Source code
set_MicroHumanPop_LandscapePointer Man page Source code
set_MicroHumanPop_TilePointer Man page Source code
set_MicroHuman_ActivitySpace Man page Source code
set_MicroHuman_FemalePopPointer Man page Source code
set_MicroHuman_LandscapePointer Man page Source code
set_MicroHuman_TilePointer Man page Source code
set_PatchesEggQ Man page Source code
set_PatchesImagoQ Man page Source code
set_lambda_MicroEmerge Man page Source code
set_season Man page Source code
simMICRO_oneStep Man page Source code
simMacro Man page Source code
sim_MicroHumanPop_ActivitySpace Man page Source code
sim_MicroHuman_ActivitySpace Man page Source code
siteAges Man page Source code
sitePops Man page Source code
treatPfMOI Man page Source code
treatPfSI Man page Source code
updateLandscape_MicroEL4P Man page Source code
util_List2Df Man page Source code
util_PfSIHistory Man page Source code
util_PfSISlice Man page Source code
util_PfSIoneHistory Man page Source code
smitdave/MASH documentation built on Aug. 17, 2017, 8:42 a.m.