Description Usage Arguments Value Examples
Generate named list of parameters used throughout MICRO/M-BITES. All arguments have default values which are listed below before the definition.
1 2 3 4 5 6 7 8 9 10 11 12 | MBITES.BRO.Parameters(B_wts = rep(1, 5), R_wts = rep(1, 5), O_wts = rep(1,
5), InAndOut = matrix(c(c(4, 2, 1, 0, 1), c(2, 1, 1, 0, 1), c(2, 1, 1, 0,
2), c(1, 1, 1, 0, 1), c(6, 4, 2, 1, 0)), byrow = FALSE, ncol = 5),
B_surv = 0.85, B_succeed = 0.8, B_time = 3/4, surviveH = 1,
probeH = 1, surviveprobeH = 1, feedH = 1, surviveZ = 1, feedZ = 1,
R_surv = 0.9, R_time = 0.8, O_surv = 0.8, O_succeed = 0.7,
O_time = 1.3, bm.a = 7.5, bm.b = 2.5, REFEED = FALSE, rf.a = 60,
rf.b = 5000, OVERFEED = FALSE, of.a = 5, of.b = 5000,
SENESCE = FALSE, sns.a = 0.1, sns.b = 100, TATTER = FALSE,
ttsz.p = 0.5, ttsz.a = 5, ttsz.b = 95, ttr.a = 15, ttr.b = 500,
bs.m = 30, bs.v = 5, maxBatch = 30, emt.m = 3, emt.v = 1,
eggT = 0, eggP = 0, energyPreG = 0, PfEIP = 12, Q = 0.9)
|
B_wts |
landing spot weights |
R_wts |
landing spot weights |
O_wts |
landing spot weights |
InAndOut |
matrix of landing probabilities |
B_surv |
Blood feeding bout baseline survival probability |
B_succeed |
Blood feeding bout probability of success (if succeed call |
B_time |
Blood feeding bout mean time elapsed (in days); alternatively the waiting time until next state transition |
surviveH |
human host encounter survival probability of initial encounter (proceed to probe) |
probeH |
human host encounter probability undeterred and begin probing |
surviveprobeH |
human host encounter survival probability of probing |
feedH |
human host encounter probability to successfully blood feed |
surviveZ |
non-human host encounter survival probability of initial encounter (proceed to feed) |
feedZ |
non-human host encounter probability to successfully blood feed |
R_surv |
Post Prandial Resting bout baseline survival probability |
R_time |
Post Prandial Resting bout mean time elapsed (in days); alternatively the waiting time until next state transition |
O_surv |
Egg Laying bout baseline survival probability |
O_succeed |
Egg Laying bout probability of success (if successfull call |
O_time |
Egg Laying bout mean time elapsed (in days); alternatively the waiting time until next state transition |
bm.a |
shape param for bloodmeal size (see |
bm.b |
shape param for bloodmeal size (see |
REFEED |
control boolean for refeeding behavior during resting bout |
rf.a |
exp param for refeeding as function of bmSize (see |
rf.b |
exp param for refeeding as function of bmSize (see |
OVERFEED |
control boolean for overfeeding during |
of.a |
exp param for overfeeding as function of bmSize (see |
of.b |
exp param for overfeeding as function of bmSize (see |
SENESCE |
control boolean for senesce mortality during |
sns.a |
exp param for senescence (see |
sns.b |
exp param for senescence (see |
TATTER |
control boolean for wing tattering during |
ttsz.p |
zero-inflation for tattering damage (see |
ttsz.a |
shape param for tattering damage (see |
ttsz.b |
shape param for tattering damage (see |
ttr.a |
exp param for tattering survival (see |
ttr.b |
exp param for tattering survival (see |
bs.m |
mean of normally-distributed egg batch size (used in |
bs.v |
standard deviation of normally-distributed egg batch size (used in |
maxBatch |
maximum egg batch size (used in |
emt.m |
mean of normally-distributed egg batch maturation time (used in |
emt.v |
standard deviation of normally-distributed egg batch maturation time (used in |
eggT |
minimum time to egg maturation |
eggP |
minimum provision to produce eggs |
energyPreG |
pre-gonotrophic energy requirement |
PfEIP |
entomological inoculation period for Plasmodium falciparum during |
Q |
human blood index (used in |
a named list of parameters
1 |
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