MACRO.Tile.Parameters: Initialize MACRO Tile Parameters for 'MacroTile'

In smitdave/MASH: MASH (Modular Analysis and Simulation for Human Health)

Description

This is used to generate a list of parameters for MacroTile and should be used during its initialization. MACRO.Tile.Parameters will generate parameters that are passed to the initialize method of the component objects in a tile:

• HumanPop: creates parameters by calling HumanPop.Parameters

• MacroPatch: creates parameters by calling MACRO.Patch.Parameters

• MacroMosquitoPop: directly initializes parameters

Usage

MACRO.Tile.Parameters(N = 10, patchSize = 20, patchMin = 10, EIP = 10,
  aquaModule = "emerge", aquaPars = list(lambda = rep(10, 10)),
  pathogenModule = "PfSI", humanPars = "auto")

Arguments

N	number of patches
patchSize	passed to sitePops
patchMin	passed to sitePops
EIP	length of entomological incubation period
aquaModule	character in 'emerge', 'EL4P'
aquaPars	Aquatic Ecology module specific parameters (see MACRO.Patch.Parameters for details) Emerge: list with elements 'lambda' EL4P: list with elements
pathogenModule	character in 'PfSI', 'PfMOI'
humanPars	character in 'auto', 'manual' ; if manual the user should pass

Value

return a list

Examples

MACRO.Tile.Parameters()

smitdave/MASH documentation built on May 30, 2019, 5:02 a.m.