meshK_MicroEL4P: Fit Psi on Mesh of K Values

In smitdave/MASH: MASH (Modular Analysis and Simulation for Human Health)

Description

Generate a mesh of K values in log space and fit psi to mesh via numerical optization, then run input EL4P populations to equilibrium. This sets values of psi so that lambda λ=K at given parameter values.

Usage

meshK_MicroEL4P(K_l, K_u, AquaPops, EL4P_PAR, psi_min = 0, psi_max = 10,
  tMax = 500, var_tol = 0.1)

Arguments

K_l	lower bound of K mesh
K_u	upper bound of K mesh
AquaPops	list of EL4P objects (see EL4P)
EL4P_PAR	parameters from EL4P.Parameters
psi_min	lower bound for fitting psi via one dimensional optimization
psi_max	upper bound for fitting psi via one dimensional optimization
tMax	maximum time to to run aquatic populations to equilibrium
var_tol	target minimum variance in lambda for aquatic populations equilibrium

Value

named list

• eq_pops: EL4P pool populations at equilibrium values

• psi_hat: fitted values of psi

• meshK: sampled values of K

smitdave/MASH documentation built on May 30, 2019, 5:02 a.m.