humanPfSI: PfSI Human Stage Pathogen Class

In smitdave/MASH: MASH (Modular Analysis and Simulation for Human Health)

Description

A class for storing parameters and state variables of human-stage PfSI infections.

Usage

humanPfSI(PfID_init, tInf_init = -1, b_init = 0.55, c_init = 0.15,
  damID_init = -1, sireID_init = -1, infected_init = FALSE,
  chemoprophylaxis_init = FALSE)

Arguments

PfID_init	PfID derived from the tile level PfPedigree
tInf_init	time of current infection (successful mosquito to human transmission event)
b_init	infected mosquito to human transmission efficiency
c_init	infected human to mosquito transmission efficiency
damID_init	female gametocyte 'mother'
sireID_init	male gametocyte 'father'
infected_init	infection status
chemoprophylaxis_init	chemoprophylaxis protection status

Methods

• get_PfID:

• push_PfID:

• get_tInf:

• push_tInf:

• get_b:

• set_b:

• get_c:

• set_c:

• get_damID:

• push_damID:

• get_sireID:

• push_sireID:

• get_infected:

• set_infected:

• get_chemoprophylaxis:

• set_chemoprophylaxis:

Fields

• a field: talk about me

smitdave/MASH documentation built on May 30, 2019, 5:02 a.m.