PfSI.Parameters: Initialize PfSI Module Parameters
Description Usage Arguments Value Examples
Description
This is mostly used to modify PfSI parameters for different human populations after creation by using set_PfSI_PAR method of HumanPop
Usage
1 2 3 4 5 6 | PfSI.Parameters(Pf_c = 0.15, Pf_b = 0.55, DurationPf = 200,
LatentPf = 10, FeverPf = 0.3, mnFeverPf = 10, vrFeverPf = 0.1,
TreatPf = 0.5, mnTreatPf = 1, mnChemoprophylaxisPf = 32,
PEProtectPf = 0.99, peBlockPf = 1, mnPEPf = 270, vrPEPf = 50,
GSProtectPf = 1, gsBlockPf = 0.9, mnGSPf = 180, vrGSPf = 20,
rdtSensPf = 0.9, rdtSpecPf = 0.1, lmSensPf = 0.9, lmSpecPf = 0.1)
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Arguments
Pf_c |
0.15; infected human to mosquito transmission efficiency |
Pf_b |
0.55; infected mosquito to human transmission efficiency |
DurationPf |
200; duration of infection (How many days does the infection last?) |
LatentPf |
10; latency (How many days after the infectious bite does the infection start?) |
FeverPf |
0.3; probability of fever |
mnFeverPf |
10; mean of Gaussian-distributed timing of fever incident (relative to start of the infection) |
vrFeverPf |
0.1; standard deviation of Gaussian-distributed timing of fever incident (relative to start of the infection) |
TreatPf |
0.5; probability of treatment |
mnTreatPf |
1; timing of treatment (relative to start of the fever) |
mnChemoprophylaxisPf |
32; Prophylaxis, time to susceptibility (duration of protection due to chemoprophylaxis) |
PEProtectPf |
0.99; proportion protected by PE vaccination (probability vaccination successful) |
peBlockPf |
1; proportion of infections blocked by PE vaccination |
mnPEPf |
270; mean duration of protection from PE vaccination |
vrPEPf |
50; standard deviation of protection from PE vaccination |
GSProtectPf |
1; proportion protected by GS vaccination (probability vaccination successful) |
gsBlockPf |
0.9; proportion of infections blocked by GS vaccination |
mnGSPf |
180; mean duration of protection from GS vaccination |
vrGSPf |
20; standard deviation of protection from GS vaccination |
rdtSensPf |
0.9; RDT sensitivity |
rdtSpecPf |
0.1; RDT specificity |
lmSensPf |
0.9; Light Microscopy sensitivity |
lmSpecPf |
0.1; Light Microscopy specificity |
Value
return a list
Examples
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