MicroMosquitoPop.Setup: Setup MICRO Mosquito Population & M-BITES Module for a...
In smitdave/MASH: MASH (Modular Analysis and Simulation for Human Health)

Description Usage Arguments Value MBITES-Cohort

Generate a list of parameters to initialize MicroMosquitoPopFemale and (optionally) MicroMosquitoPopMale for initialization of mosquito populations in a microsimulation tile MicroTile. For MICRO simulations, this function automatically interfaces with the necessary M-BITES setup functions.

1
2
3

MicroMosquitoPop.Setup(cohort = FALSE, module, aquaModule, N_female,
  N_male = NULL, time = 0, ix_female, ix_male = NULL, genotype_female,
  genotype_male = NULL, batchSize = "bms", eggMatT = "off", ...)

`cohort`	run the chosen M-BITES module in Cohort mode
`module`	which M-BITES module to use (must be a character in "BRO","BROM","BROS","BROMS","FULL")
`aquaModule`	which Aquatic Ecology module to use (must be a character in "emerge", "EL4P")
`N_female`	number of female mosquitoes
`N_male`	number of male mosquitoes
`time`	initial time to start populations (typically 0)
`ix_female`	vector of starting location indices for females (indices of `AquaticSite` they emerge from)
`ix_male`	vector of starting location indices for males (indices of `AquaticSite` they emerge from)
`genotype_female`	vector of genotpes for females
`genotype_male`	vector of genotpes for males
`batchSize`	passed to `MBITES.Generic.Setup`
`eggMatT`	passed to `MBITES.Generic.Setup`
`...`	additional named parameters to be passed to the specific M-BITES parameters function MBITES-BRO: pass to `MBITES.BRO.Parameters`

return a list

For Cohort simulations the details of the population can be set to arbitrary values as they will be overwritten by the following functions. For more details on using MBITES-Cohort to fit EL4P, see set_FemalePop_MicroTile.