smithlabcode/preseqR: Predicting Species Accumulation Curves

Originally as an R version of Preseq <doi:10.1038/nmeth.2375>, the package has extended its functionality to predict the r-species accumulation curve (r-SAC), which is the number of species represented at least r times as a function of the sampling effort. When r = 1, the curve is known as the species accumulation curve, or the library complexity curve in high-throughput genomic sequencing. The package includes both parametric and nonparametric methods, as described by Deng C, et al. (2018) <arXiv:1607.02804v3>.

Getting started

Package details

AuthorChao Deng, Timothy Daley and Andrew D. Smith
MaintainerChao Deng <[email protected]>
LicenseGPL-3
Version4.0.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("smithlabcode/preseqR")
smithlabcode/preseqR documentation built on June 27, 2018, 12:47 p.m.