SRR061157_k31: k-mer counts of a metagenomic data

In smithlabcode/preseqR: Predicting Species Accumulation Curves

k-mer counts of a metagenomic data

Description

The k-mer counts are based on a metagenome sequencing data from Human Microbiome Project with the accession number SRR061157. Only forward reads are used to generate the k-mer counts.

Details

A two-column matrix. The first column is the frequency j = 1,2,…; and the second column is N_j, the number of 31-mers observed exactly j times.

References

Human Microbiome Project (https://hmpdacc.org/).

Examples

##load library
library(preseqR)

##load data
data(SRR061157_k31)

smithlabcode/preseqR documentation built on Sept. 13, 2022, 6:29 p.m.