SRR1301329_1M_base: Coverage histogram of a WES data
In smithlabcode/preseqR: Predicting Species Accumulation Curves
SRR1301329_1M_base R Documentation
Coverage histogram of a WES data
Description
The coverage histogram is based on a whole-exome sequencing (WES)
data from Simons Foundation Autism Research Initiative with the accession number
SRR1301329. One million reads are randomly sampled from the raw data to
generate this coverage histogram.
Details
A two-column matrix.
The first column is the frequency j = 1,2,…; and the second column
is N_j, the number of nucleotides in the genome covered exactly
j times.
References
Simons Foundation Autism Research Initiative (https://www.sfari.org/).
Examples
##load library
library(preseqR)
##load data
data(SRR1301329_1M_base)
smithlabcode/preseqR documentation built on Sept. 13, 2022, 6:29 p.m.
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| SRR1301329_1M_base | R Documentation |
Coverage histogram of a WES data
Description
The coverage histogram is based on a whole-exome sequencing (WES) data from Simons Foundation Autism Research Initiative with the accession number SRR1301329. One million reads are randomly sampled from the raw data to generate this coverage histogram.
Details
A two-column matrix. The first column is the frequency j = 1,2,…; and the second column is N_j, the number of nucleotides in the genome covered exactly j times.
References
Simons Foundation Autism Research Initiative (https://www.sfari.org/).
Examples
##load library library(preseqR) ##load data data(SRR1301329_1M_base)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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