SRR1301329_base: Coverage histogram of a WES data
In smithlabcode/preseqR: Predicting Species Accumulation Curves
SRR1301329_base R Documentation
Coverage histogram of a WES data
Description
The coverage histogram is based on a whole-exome sequencing (WES)
data from Simons Foundation Autism Research Initiative with the accession number
SRR1301329. Only forward reads are used to generate the coverage histogram.
Details
A two-column matrix.
The first column is the frequency j = 1,2,…; and the second column
is N_j, the number of nucleotides in the genome covered exactly
j times.
References
Simons Foundation Autism Research Initiative (https://www.sfari.org/).
Examples
##load library
library(preseqR)
##load data
data(SRR1301329_base)
smithlabcode/preseqR documentation built on Sept. 13, 2022, 6:29 p.m.
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| SRR1301329_base | R Documentation |
Coverage histogram of a WES data
Description
The coverage histogram is based on a whole-exome sequencing (WES) data from Simons Foundation Autism Research Initiative with the accession number SRR1301329. Only forward reads are used to generate the coverage histogram.
Details
A two-column matrix. The first column is the frequency j = 1,2,…; and the second column is N_j, the number of nucleotides in the genome covered exactly j times.
References
Simons Foundation Autism Research Initiative (https://www.sfari.org/).
Examples
##load library library(preseqR) ##load data data(SRR1301329_base)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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