EnrichrBarPlot: EnrichrBarPlot

In smorabit/scWGCNA: hdWGCNA

EnrichrBarPlot

Description

Makes barplots from RunEnrichr output.

Usage

EnrichrBarPlot(
  seurat_obj,
  outdir = "enrichr_plots",
  n_terms = 25,
  plot_size = c(6, 15),
  logscale = FALSE,
  plot_bar_color = NULL,
  plot_text_color = NULL,
  wgcna_name = NULL,
  ...
)

Arguments

seurat_obj	A Seurat object
outdir	directory to place output .pdf files
n_terms	the number of terms to plot in each barplot
plot_size	the size of the output .pdf files (width, height)
logscale	logical controlling whether to plot the enrichment on a log scale
plot_bar_color	The color of the bars in the bar plots. Default option (NULL) makes the bars colored using the module's assigned color.
plot_text_color	The color of the text labels on the bar plots
wgcna_name	The name of the hdWGCNA experiment in the seurat_obj@misc slot

Examples

EnrichrBarPlot

smorabit/scWGCNA documentation built on April 4, 2024, 10:32 a.m.