AvgModuleExpr | AverageModuleExpr |
BinPseudotime | BinPseudotime |
check_inputs | Check inputs |
CheckSeurat5 | CheckSeurat5 |
CheckWGCNAName | CheckWGCNAName |
ComputeModuleEigengene | ComputeModuleEigengene |
ConstructMetacells | ConstructMetacells |
ConstructMetaspots | ConstructMetaspots |
ConstructNetwork | ConstructNetwork |
ConstructPseudobulk | ConstructPseudobulk |
corSparse | Sparse matrix correlation |
DimPlotMetacells | DimPlotMetacells |
DoHubGeneHeatmap | Plots gene expression of hub genes as a heatmap |
EnrichrBarPlot | EnrichrBarPlot |
EnrichrDotPlot | EnrichrDotPlot |
FindAllDMEs | FindAllDMEs |
FindDMEs | FindDMEs |
FindMajorIsoforms | FindMajorIsoforms |
GetActiveWGCNA | GetActiveWGCNA |
GetActiveWGCNAName | GetActiveWGCNAName |
GetAvgModuleExpr | GetAvgModuleExpr |
GetDatExpr | GetDatExpr |
GetDegrees | GetDegrees |
GetEnrichrTable | GetEnrichrTable |
GetHubGenes | GetHubGenes |
GetMELoadings | GetMELoadings |
GetMEs | GetMEs |
GetMetacellObject | GetMetacellObject |
GetModulePreservation | GetModulePreservation |
GetModules | GetModules |
GetModuleScores | GetModuleScores |
GetModuleTraitCorrelation | GetModuleTraitCorrelation |
GetModuleUMAP | GetModuleUMAP |
GetMotifMatrix | GetMotifMatrix |
GetMotifOverlap | GetMotifOverlap |
GetMotifs | GetMotifs |
GetMotifScores | GetMotifScores |
GetMotifTargets | GetMotifTargets |
GetMultiExpr | GetMultiExpr |
GetNetworkData | GetNetworkData |
GetPFMList | GetPFMList |
GetPowerTable | GetPowerTable |
GetTOM | GetTOM |
GetWGCNAGenes | GetWGCNAGenes |
GetWGCNAParams | GetWGCNAParams |
HubGeneNetworkPlot | HubGeneNetworkPlot |
MetacellsByGroups | MetacellsByGroups |
MetaspotsByGroups | MetaspotsByGroups |
ModuleConnectivity | ModuleConnectivity |
ModuleCorrelogram | ModuleCorrelogram |
ModuleCorrNetwork | ModuleCorrNetworks |
ModuleEigengenes | ModuleEigengenes |
ModuleExprScore | ModuleExprScore |
ModuleFeaturePlot | ModuleFeaturePlot |
ModuleNetworkPlot | ModuleNetworkPlot |
ModulePreservation | ModulePreservation |
ModulePreservationNetRep | ModulePreservationNetRep |
ModuleRadarPlot | ModuleRadarPlot |
ModuleTFNetwork | ModuleTFNetwork |
ModuleTopologyBarplot | ModuleTopologyBarplot |
ModuleTopologyHeatmap | ModuleTopologyHeatmap |
ModuleTraitCorrelation | ModuleTraitCorrelation' |
ModuleUMAPPlot | ModuleUMAPPlot |
MotifOverlapBarPlot | Displays the top n TFs in a set of modules as a bar plot |
MotifScan | Scan gene promoters for a set of TF PWMs |
MotifTargetScore | MotifTargetScore |
NormalizeMetacells | NormalizeMetacells |
OverlapBarPlot | OverlapBarPlot |
OverlapDotPlot | OverlapDotPlot |
OverlapModulesDEGs | OverlapModulesDEGs |
OverlapModulesMotifs | Overlap modules with TF target genes |
PlotDendrogram | PlotDendrogram |
PlotDMEsLollipop | PlotDMEsLollipop |
PlotDMEsVolcano | PlotDMEsVolcano |
PlotKMEs | PlotKMEs |
PlotLollipop | PlotLollipop |
PlotModulePreservation | PlotModulePreservation |
PlotModulePreservationLollipop | PlotModulePreservationLollipop |
PlotModuleTraitCorrelation | PlotModuleTraitCorrelation |
PlotModuleTrajectory | PlotModuleTrajectory |
PlotSoftPowers | PlotSoftPowers |
ProjectModules | ProjectModules |
ReassignModules | ReassignModules |
ResetModuleColors | ResetModuleColors |
ResetModuleNames | ResetModuleNames |
RunEnrichr | RunEnrichr |
RunHarmonyMetacells | RunHarmonyMetacells |
RunModuleUMAP | RunModuleUMAP |
RunPCAMetacells | RunPCAMetacells |
RunUMAPMetacells | RunUMAPMetacells |
scale01 | scale01 |
ScaleMetacells | ScaleMetacells |
SelectNetworkGenes | SelectNetworkGenes |
SetActiveWGCNA | SetActiveWGCNA |
SetAvgModuleExpr | SetAvgModuleExpr |
SetDatExpr | SetDatExpr |
SetDegrees | SetDegrees |
SetEnrichrTable | SetEnrichrTable |
SetMELoadings | SetMELoadings |
SetMEs | SetMEs |
SetMetacellObject | SetMetacellObject |
SetModulePreservation | SetModulePreservation |
SetModules | SetModules |
SetModuleScores | SetModuleScores |
SetModuleTraitCorrelation | SetModuleTraitCorrelation |
SetModuleUMAP | SetModuleUMAP |
SetMotifMatrix | SetMotifMatrix |
SetMotifOverlap | SetMotifOverlap |
SetMotifs | SetMotifs |
SetMotifScores | SetMotifScores |
SetMotifTargets | SetMotifTargets |
SetMultiExpr | SetMultiExpr |
SetNetworkData | SetNetworkData |
SetPFMList | SetPFMList |
SetPowerTable | SetPowerTable |
SetupForWGCNA | SetupForWGCNA |
SetWGCNAGenes | SetWGCNAGenes |
SetWGCNAParams | SetWGCNAParams |
shuffle_points | shuffle_points |
TestSoftPowers | TestSoftPowers |
TestSoftPowersConsensus | TestSoftPowersConsensus |
to_pseudobulk | Create a pseudobulk matrix |
TransferModuleGenome | TransferModuleGenome |
umap_theme | umap_theme |
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