PlotModuleTraitCorrelation: PlotModuleTraitCorrelation

In smorabit/scWGCNA: hdWGCNA

PlotModuleTraitCorrelation

Description

Plotting function for Module Preservation statistics

Usage

PlotModuleTraitCorrelation(
  seurat_obj,
  high_color = "red",
  mid_color = "grey90",
  low_color = "blue",
  label = NULL,
  label_symbol = "stars",
  plot_max = NULL,
  text_size = 2,
  text_color = "black",
  text_digits = 3,
  combine = TRUE,
  wgcna_name = NULL
)

Arguments

seurat_obj	A Seurat object
high_color	color for positive correlation
mid_color	color for zero correlation
low_color	color for negative correlation
label	logical determining whether to add p-val label in each cell of the heatmap
label_symbol	show the labels as 'stars' or as 'numeric'
plot_max	maximum value of correlation to show on the colorbar
text_size	size of the labels
text_color	color of the text labels
text_digits	how many digits to show in the text labels
combine	logical determining whether to plot as one combined plot (TRUE) or to return individual plots as a list (FALSE)

Examples

PlotModulePreservation

smorabit/scWGCNA documentation built on April 4, 2024, 10:32 a.m.