GetHubGenes: GetHubGenes
In smorabit/scWGCNA: hdWGCNA
View source: R/getters_and_setters.R
GetHubGenes R Documentation
GetHubGenes
Description
Extract the top N hub genes for a given set of modules. This function outputs
a table with the gene name, the module, and the kME for that module for the
top N hub genes.
Usage
GetHubGenes(seurat_obj, n_hubs = 10, mods = NULL, wgcna_name = NULL)
Arguments
seurat_obj
A Seurat object
n_hubs
the number of hub genes to select for each module
mods
list of modules, selects all modules by default
wgcna_name
The name of the hdWGCNA experiment in the seurat_obj@misc slot
smorabit/scWGCNA documentation built on April 4, 2024, 10:32 a.m.
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View source: R/getters_and_setters.R
| GetHubGenes | R Documentation |
GetHubGenes
Description
Extract the top N hub genes for a given set of modules. This function outputs a table with the gene name, the module, and the kME for that module for the top N hub genes.
Usage
GetHubGenes(seurat_obj, n_hubs = 10, mods = NULL, wgcna_name = NULL)
Arguments
seurat_obj |
A Seurat object |
n_hubs |
the number of hub genes to select for each module |
mods |
list of modules, selects all modules by default |
wgcna_name |
The name of the hdWGCNA experiment in the seurat_obj@misc slot |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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