OverlapModulesDEGs: OverlapModulesDEGs
In smorabit/scWGCNA: hdWGCNA
OverlapModulesDEGs R Documentation
OverlapModulesDEGs
Description
Performs Fisher's Exact Test for overlap between DEGs and hdWGCNA modules.
Usage
OverlapModulesDEGs(
seurat_obj,
deg_df,
fc_cutoff = 0.5,
group_col = "cluster",
wgcna_name = NULL,
...
)
Arguments
seurat_obj
A Seurat object
deg_df
DEG table formatted like the output from Seurat's FindMarkers
fc_cutoff
log fold change cutoff for DEGs to be included in the overlap test
group_col
the name of the column in deg_df containing the cell grouping information
wgcna_name
The name of the hdWGCNA experiment in the seurat_obj@misc slot
smorabit/scWGCNA documentation built on April 4, 2024, 10:32 a.m.
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| OverlapModulesDEGs | R Documentation |
OverlapModulesDEGs
Description
Performs Fisher's Exact Test for overlap between DEGs and hdWGCNA modules.
Usage
OverlapModulesDEGs(
seurat_obj,
deg_df,
fc_cutoff = 0.5,
group_col = "cluster",
wgcna_name = NULL,
...
)
Arguments
seurat_obj |
A Seurat object |
deg_df |
DEG table formatted like the output from Seurat's FindMarkers |
fc_cutoff |
log fold change cutoff for DEGs to be included in the overlap test |
group_col |
the name of the column in deg_df containing the cell grouping information |
wgcna_name |
The name of the hdWGCNA experiment in the seurat_obj@misc slot |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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