inst/shiny/ui.R
In smouksassi/coveffectsplot: Produce Forest Plots to Visualize Covariate Effects
inline_ui <- function(tag) {
div(style = "display: inline-block", tag)
}
fluidPage(
useShinyjs(),
titlePanel(paste0("coveffectsplot: ",utils::packageVersion("coveffectsplot"))),
fluidRow(
column(
2,
tabsetPanel(
tabPanel(
"Inputs",
br(),
tags$div(
tags$strong("Choose csv file to upload"),
"or", actionLink("sample_data_btn", "use sample data")
),
fileInput("datafile", NULL,
multiple = FALSE, accept = c("csv")),
shinyjs::hidden(
selectizeInput(
'exposurevariables',
label = "Parameter(s)",
choices = c(),
multiple = TRUE,
options = list(plugins = list('remove_button', 'drag_drop')),
width = '800px'
),
checkboxInput('shapebyparamname', 'Change Symbol by Parameter(s) ?', value = TRUE),
checkboxInput('colourbyparamname', 'Change Color by Parameter(s) ?', value = FALSE),
sliderInput("vdodgeheight", "Vertical Space Between Parameters(s)",
min=0.5, max=2, value=0.8,width = '800px'),
selectizeInput(
"covariates",
"Covariates Top to Bottom (Remove/Drag and Drop to Desired Order):",
choices = c(),
multiple = TRUE,
options = list(
placeholder = 'Please select one or more variables',
plugins = list('remove_button', 'drag_drop')
),
width = '800px'
),
selectizeInput(
'covvalueorder',
label = paste("Drag and Drop to Desired Order within facets", "values"),
choices = c(),
multiple = TRUE,
options = list(plugins = list('remove_button', 'drag_drop')),
width = '800px'
)
)
), # tabPanel
tabPanel("Facets",
selectInput( "facetformula", "Facet Formula:",
choices = c("covname ~ .",
"covname ~ paramname"),
selected = c("covname ~ ."),
multiple = FALSE),
tabsetPanel(
tabPanel("Size/Angle/Face",
sliderInput("facettexty", "Facet Text Size Y",
min = 0, max = 32, step = 1, value = 22),
sliderInput("facettextx", "Facet Text Size X",
min = 0, max = 32, step = 1, value = 22),
sliderInput("facettextyangle", "Facet Text Angle Y",
min = 0, max = 180+90, step = 90, value = 0),
sliderInput("facettextxangle", "Facet Text Angle X",
min = 0, max = 90, step = 90, value = 0),
checkboxInput('boldfacettext', "Bold Facet Text", value = TRUE)
),
tabPanel("Justification",
sliderInput("x_facet_text_vjust", "Facet Text Vertical Justification X",
min = 0, max = 1, step = 0.1, value = 0.5),
sliderInput("y_facet_text_vjust", "Facet Text Vertical Justification Y",
min = 0, max = 1, step = 0.1, value = 0.5),
sliderInput("x_facet_text_hjust", "Facet Text Horizontal Justification X",
min = 0, max = 1, step = 0.1, value = 0.5),
sliderInput("y_facet_text_hjust", "Facet Text Horizontal Justification y",
min = 0, max = 1, step = 0.1, value = 0.5)
),
tabPanel("Facet Labels",
selectInput('facetlabeller' ,'Facet Label:',c(
"Variable(s) Name(s) and Value(s)" ="label_both",
"Value(s)"="label_value",
"Parsed Expression" ="label_parsed",
"Depends on Context" ="label_context",
"Wrap lines" ="label_wrap_gen"),
selected="label_value"),
conditionalPanel(
condition = "input.facetlabeller== 'label_wrap_gen' " ,
sliderInput("labelwrapwidth", "N Characters to Wrap Labels:",
min=1, max=100, value=c(25),step=1)
),
checkboxInput('facetwrapmultiline',
'Strip labels on multiple lines?',
value = TRUE)
)
),
selectizeInput( "stripplacement", "Strip Placement:",
choices = c("inside","outside"),
selected = c("outside"),
options = list( maxItems = 1 ) ),
selectInput( "facetswitch", "Facet Switch to Near Axis:",
choices = c("both","y","x","none"),
selected = c("both"),
multiple = FALSE),
selectInput( "facetscales", "Facet Scales:",
choices = c("free_y","fixed","free_x","free"),
selected = c("free_y"),
multiple = FALSE),
selectInput('facetspace' ,'Facet Spaces:',
c("fixed","free_x","free_y","free") ,
selected = c("free_y"))
),
tabPanel(
"X/Y Axes",
sliderInput("ylablesize", "Y axis labels size", min=1, max=32, value=24,step=0.5),
checkboxInput('breakylabel', "Break long Y axis labels?", value = FALSE),
conditionalPanel(
condition = "input.breakylabel" ,
sliderInput("ylabeltextwidth", "Y axis Width to break at:", min=1, max=40, value=25, step=1)),
sliderInput("xlablesize", "X axis labels size", min=1, max=32, value=24,step=0.5),
checkboxInput('showyaxisgridlines', "Keep Y axis Gridlines", value = TRUE),
checkboxInput('showxaxisgridlines', "Keep X axis Gridlines", value = TRUE),
checkboxInput('customxticks', 'Custom X axis Ticks ?', value = FALSE),
conditionalPanel(
condition = "input.customxticks" ,
textInput("xaxisbreaks",label ="X axis major Breaks",
value = as.character(paste(
0,0.25,0.5,0.8,1,1.25,1.5,2
,sep=",") )
),
checkboxInput('customxlabels', 'Custom X axis Labels ?', value = FALSE),
conditionalPanel(
condition = "input.customxticks & input.customxlabels" ,
textInput("xaxislabels",label ="X axis major Labels",
value = as.character(paste(
"0","1/4","1/2","0.8","1","1.25","1.5","2"
,sep=",") )
)
),
textInput("xaxisminorbreaks",label ="X axis minor Breaks",
value = as.character(paste(
0.75,1.333
,sep=",") )
),
hr()
),
checkboxInput('userxzoom', 'Custom X axis Range ?', value = FALSE),
conditionalPanel(
condition = "input.userxzoom" ,
numericInput("lowerxin",label = "Lower X Limit",value = 0.01,min=NA,max=NA,width='100%'),
numericInput("upperxin",label = "Upper X Limit",value = 2,min=NA,max=NA,width='100%')
),
checkboxInput('logxscale', 'Log-scale X axis ?', value = FALSE),
textInput("yaxistitle", label = "Y axis Title", value = ""),
conditionalPanel(
condition = "input.yaxistitle!=''" ,
checkboxInput('parseyaxistitle', 'Parse Y axis Title?', value = FALSE)),
textInput("xaxistitle", label = "X axis Title", value = ""),
conditionalPanel(
condition = "input.xaxistitle!=''" ,
checkboxInput('parsexaxistitle', 'Parse X axis Title?', value = FALSE))
),
tabPanel(
"How To",
hr(),
includeMarkdown(file.path("text", "howto.md"))
) # tabpanel
) # tabsetPanel
), # column3
column(
8,
plotOutput('plot', height = "auto", width = "100%"),
shinyjs::hidden(
actionButton("get_code", "Show Code", icon = icon("code")), br(), br()
)
), # column6
column(
2,
tabsetPanel(
tabPanel(
"Table Options",
numericInput("sigdigits",label = "Significant Digits",value = 2,min=0,max=NA),
sliderInput("tabletextsize", "Table Text Size", min=1, max=12,step=0.5, value=7),
checkboxInput('tabletextcoloroverwrite',
'Overwrite Table Text Color?', value = FALSE),
conditionalPanel(condition = "input.tabletextcoloroverwrite" ,
colourpicker::colourInput("tabletextcolour",
"Table Text Color:",
value= "black",
showColour = "both",allowTransparent=TRUE,
returnName = TRUE)),
sliderInput("plottotableratio", "Plot to Table Ratio", min=1, max=5,
value=4,step=0.25,
animate = FALSE),
selectInput('tableposition','Table Position:',
c("on the right" = "right", "below" = "below", "none" = "none") ),
selectInput( "showtablefacetstrips", "Show Table Facet Strip on:",
choices = c("none","both","y","x"),
selected = c("none"),
multiple = FALSE),
selectInput( "tablefacetswitch", "Table Facet Switch to Near Axis:",
choices = c("both","y","x","none"),
selected = c("both"),
multiple = FALSE),
checkboxInput('showtableyaxisticklabel',
'Show Table y axis ticks/labels ?', value = FALSE),
checkboxInput('reservetablexaxislabelspace', 'Reserve Table x axis space ?',
value = FALSE),
checkboxInput('tablepanelborder',
'Draw Table Panel Borders ?',
value = TRUE)
),#tabpanel
tabPanel(
"Reference Options",
checkboxInput('showrefvalue', 'Show Reference Line?', value = TRUE),
conditionalPanel(condition = "input.showrefvalue" ,
numericInput("refvalue","Reference Line",value = 1,step = 0.1)),
checkboxInput('showrefarea', 'Show Reference Area?', value = TRUE),
conditionalPanel(condition = "input.showrefarea" ,
uiOutput("refarea")),
colourpicker::colourInput("fillrefarea",
"Reference Area Fill:",
value= "#BEBEBE50",
showColour = "both",allowTransparent=TRUE,
returnName = TRUE),
div( actionButton("fillrefareareset", "Reset Reference Area Fill"),
style="text-align: right"),
colourpicker::colourInput("colorrefvalue",
"Reference Line Color:",
value= "black",
showColour = "both",allowTransparent=TRUE,
returnName = TRUE),
div( actionButton("colorrefvaluereset", "Reset Reference Line Color"),
style="text-align: right"),
sliderInput("sizerefvalue", "Reference Line Size:",
min = 0, max = 10, step = 0.1, value = 1),
selectInput('linetyperefvalue',
'Reference Line Linetype:',c("solid","dashed",
"dotted", "dotdash",
"longdash", "twodash","blank"),selected = "dashed")
),#tabpanel
tabPanel(
"Colour/Legend Options/Theme",
colourpicker::colourInput("stripbackgroundfill",
"Strip Background Fill:",
value="#E5E5E5",
showColour = "both",allowTransparent=TRUE, returnName = TRUE),
div( actionButton("stripbackfillreset", "Reset Strip Background Fill"),
style="text-align: right"),
colourpicker::colourInput("y_facet_text_col",
"Facet Text Color Y:",
value="black",
showColour = "both",allowTransparent=TRUE, returnName = TRUE),
colourpicker::colourInput("x_facet_text_col",
"Facet Text Color X:",
value="black",
showColour = "both",allowTransparent=TRUE, returnName = TRUE),
checkboxInput('removestrip', "Show Strip Background",value = TRUE),
conditionalPanel(condition = "!input.colourbyparamname",
colourpicker::colourInput("colourpointrange",
"Point Range Colour:",
value="blue",
showColour = "both",allowTransparent=TRUE, returnName = TRUE),
div( actionButton("colourpointrangereset", "Reset Point Range Colour"),
style="text-align: right")
),
conditionalPanel(condition = "!input.colourbyparamname",
colourpicker::colourInput("colourbsvrange",
"BSV Range Colour:",
value="red",
showColour = "both",allowTransparent=TRUE, returnName = TRUE),
div( actionButton("colourbsvrangereset", "Reset BSV Range Colour"),
style="text-align: right")
),
conditionalPanel(condition = "!input.shapebyparamname",
selectInput(inputId = "shapepointrange",
label = "Point Range Shape:",
choices = c("circle small", "triangle" ,"square","plus","square cross","asterisk",
"square open","cross","diamond open","triangle down open","square cross",
"diamond plus","circle plus","star","star","square plus","circle cross",
"square triangle","diamond","circle","bullet",
"circle filled","square filled","diamond filled","triangle filled",
"triangle down filled"),
selected = "circle small"
)
),
conditionalPanel(condition = "!input.shapebyparamname",
selectInput(inputId = "shapebsvrange",
label = "BSV Range Shape:",
choices = c("circle small", "triangle" ,"square","plus","square cross","asterisk",
"square open","cross","diamond open","triangle down open","square cross",
"diamond plus","circle plus","star","star","square plus","circle cross",
"square triangle","diamond","circle","bullet",
"circle filled","square filled","diamond filled","triangle filled",
"triangle down filled"),
selected = "circle small"
)
),
conditionalPanel(condition = "input.colourbyparamname",uiOutput('userdefinedcolorui')
),
conditionalPanel(condition = "input.shapebyparamname",uiOutput('userdefinedshapeui')
),
sliderInput("sizepointrange", "Point range size",
min = 0, max = 10, step = 0.1, value = 1),
sliderInput("fattenpointrange", "Point range fatten",
min = 0, max = 10, step = 0.1, value = 4),
sliderInput("linewidthpointrange", "Point range linewidth",
min = 0, max = 10, step = 0.1, value = 1),
sliderInput("base_size", "Base size for the theme",
min = 1, max = 30, step = 0.1, value = 22),
sliderInput("height", "Plot Height", min=1080/4, max=1080,
value=900, animate = FALSE),
checkboxInput('theme_benrich', "Apply Ben's Theme",value = FALSE),
conditionalPanel(
condition = "input.theme_benrich",
textInput("custom_table_title", label ="Table Title",
value=""),
sliderInput("table_title_size", "Size for Table Title",
min = 1, max = 30, step = 0.1, value = 15)
) ,
selectizeInput(
'legendposition',
label = "Legend Position",
choices = c("top","bottom","right","none"),
selected = c("top"),
multiple=FALSE)
),#tabpanel
tabPanel(
"Custom Legend Ordering/Spacing",
inline_ui(
numericInput("ncolinterval",label = "Number of columns for the Interval legend",
value = 1,min=NA,max=NA,width='120px')),
inline_ui(
numericInput("ncolshape",label = "Number of columns for the shape legend",
value = 1,min=NA,max=NA,width='120px')),
selectizeInput(
'legendordering',
label = paste("Drag/Drop to reorder","Colour, Ref, Area Legends"),
choices = c("pointinterval","ref","area","shape"),
selected = c("pointinterval","ref","area","shape"),
multiple=TRUE, options = list(
plugins = list('drag_drop')
)),
checkboxInput('legendshapereverse',
'Reverse the order of shape legend items ?',value = TRUE),
checkboxInput('legendcoloreverse',
'Reverse the order of colour legend items ?',value = FALSE),
sliderInput("legendspacex", "Multiplier for Space between Legends",
min = 0, max = 1.5, step = 0.1, value = 1),
numericInput("panelspacing",label = "Strip Panel Spacing",
value = 5.5,min=0,step=0.1,
max=20,width='100%'),
inline_ui(
numericInput("margintop",label = "Plot Top Margin",
value = 0,min=0,max=NA,width='80px')),
inline_ui(
numericInput("tabletop",label = "Table Top Margin",
value = 0,min=0,max=NA,width='80px')),
inline_ui(
numericInput("legendtop",label = "Legend Top Margin",
value = 0,min=0,max=NA,width='80px')),
inline_ui(
numericInput("marginleft",label = "Plot Left Margin",
value = 5.5,min=0,max=NA,width='80px')),
inline_ui(
numericInput("tableleft",label = "Table Left Margin",
value = 5.5,min=0,max=NA,width='80px')),
inline_ui(
numericInput("legendleft",label = "Legend Left Margin",
value = 5.5,min=0,max=NA,width='80px')),
inline_ui(
numericInput("marginright",label = "Plot Right Margin",
value = 5.5,min=0,max=NA,width='80px')),
inline_ui(
numericInput("tableright",label = "Table Right Margin",
value = 5.5,min=0,max=NA,width='80px')),
inline_ui(
numericInput("legendright",label = "Legend Right Margin",
value = 5.5,min=0,max=NA,width='80px')),
inline_ui(
numericInput("marginbottom",label = "Plot Bottom Margin",
value = 0,min=0,max=NA,width='80px')),
inline_ui(
numericInput("tablebottom",label = "Table Bottom Margin",
value = 0,min=0,max=NA,width='80px')),
inline_ui(
numericInput("legendbottom",label = "Legend Bottom Margin",
value = 0,min=0,max=NA,width='80px'))
),#tabpanel
tabPanel(
"Custom Legend Text",
textInput("customplottitle", label ="Plot Title",value = ""),
textInput("customcolourtitle", label ="Pointinterval Legend text",
value="Median (points)\\n95% CI (horizontal lines)"),
textInput("customcolourtitletext", label ="Pointinterval Legend title",
value=""),
textInput("customshapetitletext", label ="Shape Legend title",
value=""),
textInput("custombsvtitle", label ="BSV Legend text",
value="BSV (points)\\nPrediction Intervals (horizontal lines)"),
textInput("customlinetypetitle", label ="Ref Legend text",
value="Reference (vertical line)\\nClinically relevant limits (colored area)"),
textInput("customfilltitle", label ="Area Legend text",
value="Reference (vertical line)\\nClinically relevant limits (colored area)"),
checkboxInput('combineareareflegend',
'Combine Ref and Area Legends if they share the same text ?',value = TRUE),
checkboxInput('combineintervalshapelegend',
'Combine Interval and Shape Legends?',value = TRUE),
sliderInput("legendtitlesize", "Text size of legend(s) title(s) ",
min=1, max=32, value= 16, step=0.5)
)#tabpanel
) # tabsetpanel
) # closes the column 3
)# fluidrow
)#fluidpage
smouksassi/coveffectsplot documentation built on Jan. 19, 2024, 8:24 p.m.
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inline_ui <- function(tag) {
div(style = "display: inline-block", tag)
}
fluidPage(
useShinyjs(),
titlePanel(paste0("coveffectsplot: ",utils::packageVersion("coveffectsplot"))),
fluidRow(
column(
2,
tabsetPanel(
tabPanel(
"Inputs",
br(),
tags$div(
tags$strong("Choose csv file to upload"),
"or", actionLink("sample_data_btn", "use sample data")
),
fileInput("datafile", NULL,
multiple = FALSE, accept = c("csv")),
shinyjs::hidden(
selectizeInput(
'exposurevariables',
label = "Parameter(s)",
choices = c(),
multiple = TRUE,
options = list(plugins = list('remove_button', 'drag_drop')),
width = '800px'
),
checkboxInput('shapebyparamname', 'Change Symbol by Parameter(s) ?', value = TRUE),
checkboxInput('colourbyparamname', 'Change Color by Parameter(s) ?', value = FALSE),
sliderInput("vdodgeheight", "Vertical Space Between Parameters(s)",
min=0.5, max=2, value=0.8,width = '800px'),
selectizeInput(
"covariates",
"Covariates Top to Bottom (Remove/Drag and Drop to Desired Order):",
choices = c(),
multiple = TRUE,
options = list(
placeholder = 'Please select one or more variables',
plugins = list('remove_button', 'drag_drop')
),
width = '800px'
),
selectizeInput(
'covvalueorder',
label = paste("Drag and Drop to Desired Order within facets", "values"),
choices = c(),
multiple = TRUE,
options = list(plugins = list('remove_button', 'drag_drop')),
width = '800px'
)
)
), # tabPanel
tabPanel("Facets",
selectInput( "facetformula", "Facet Formula:",
choices = c("covname ~ .",
"covname ~ paramname"),
selected = c("covname ~ ."),
multiple = FALSE),
tabsetPanel(
tabPanel("Size/Angle/Face",
sliderInput("facettexty", "Facet Text Size Y",
min = 0, max = 32, step = 1, value = 22),
sliderInput("facettextx", "Facet Text Size X",
min = 0, max = 32, step = 1, value = 22),
sliderInput("facettextyangle", "Facet Text Angle Y",
min = 0, max = 180+90, step = 90, value = 0),
sliderInput("facettextxangle", "Facet Text Angle X",
min = 0, max = 90, step = 90, value = 0),
checkboxInput('boldfacettext', "Bold Facet Text", value = TRUE)
),
tabPanel("Justification",
sliderInput("x_facet_text_vjust", "Facet Text Vertical Justification X",
min = 0, max = 1, step = 0.1, value = 0.5),
sliderInput("y_facet_text_vjust", "Facet Text Vertical Justification Y",
min = 0, max = 1, step = 0.1, value = 0.5),
sliderInput("x_facet_text_hjust", "Facet Text Horizontal Justification X",
min = 0, max = 1, step = 0.1, value = 0.5),
sliderInput("y_facet_text_hjust", "Facet Text Horizontal Justification y",
min = 0, max = 1, step = 0.1, value = 0.5)
),
tabPanel("Facet Labels",
selectInput('facetlabeller' ,'Facet Label:',c(
"Variable(s) Name(s) and Value(s)" ="label_both",
"Value(s)"="label_value",
"Parsed Expression" ="label_parsed",
"Depends on Context" ="label_context",
"Wrap lines" ="label_wrap_gen"),
selected="label_value"),
conditionalPanel(
condition = "input.facetlabeller== 'label_wrap_gen' " ,
sliderInput("labelwrapwidth", "N Characters to Wrap Labels:",
min=1, max=100, value=c(25),step=1)
),
checkboxInput('facetwrapmultiline',
'Strip labels on multiple lines?',
value = TRUE)
)
),
selectizeInput( "stripplacement", "Strip Placement:",
choices = c("inside","outside"),
selected = c("outside"),
options = list( maxItems = 1 ) ),
selectInput( "facetswitch", "Facet Switch to Near Axis:",
choices = c("both","y","x","none"),
selected = c("both"),
multiple = FALSE),
selectInput( "facetscales", "Facet Scales:",
choices = c("free_y","fixed","free_x","free"),
selected = c("free_y"),
multiple = FALSE),
selectInput('facetspace' ,'Facet Spaces:',
c("fixed","free_x","free_y","free") ,
selected = c("free_y"))
),
tabPanel(
"X/Y Axes",
sliderInput("ylablesize", "Y axis labels size", min=1, max=32, value=24,step=0.5),
checkboxInput('breakylabel', "Break long Y axis labels?", value = FALSE),
conditionalPanel(
condition = "input.breakylabel" ,
sliderInput("ylabeltextwidth", "Y axis Width to break at:", min=1, max=40, value=25, step=1)),
sliderInput("xlablesize", "X axis labels size", min=1, max=32, value=24,step=0.5),
checkboxInput('showyaxisgridlines', "Keep Y axis Gridlines", value = TRUE),
checkboxInput('showxaxisgridlines', "Keep X axis Gridlines", value = TRUE),
checkboxInput('customxticks', 'Custom X axis Ticks ?', value = FALSE),
conditionalPanel(
condition = "input.customxticks" ,
textInput("xaxisbreaks",label ="X axis major Breaks",
value = as.character(paste(
0,0.25,0.5,0.8,1,1.25,1.5,2
,sep=",") )
),
checkboxInput('customxlabels', 'Custom X axis Labels ?', value = FALSE),
conditionalPanel(
condition = "input.customxticks & input.customxlabels" ,
textInput("xaxislabels",label ="X axis major Labels",
value = as.character(paste(
"0","1/4","1/2","0.8","1","1.25","1.5","2"
,sep=",") )
)
),
textInput("xaxisminorbreaks",label ="X axis minor Breaks",
value = as.character(paste(
0.75,1.333
,sep=",") )
),
hr()
),
checkboxInput('userxzoom', 'Custom X axis Range ?', value = FALSE),
conditionalPanel(
condition = "input.userxzoom" ,
numericInput("lowerxin",label = "Lower X Limit",value = 0.01,min=NA,max=NA,width='100%'),
numericInput("upperxin",label = "Upper X Limit",value = 2,min=NA,max=NA,width='100%')
),
checkboxInput('logxscale', 'Log-scale X axis ?', value = FALSE),
textInput("yaxistitle", label = "Y axis Title", value = ""),
conditionalPanel(
condition = "input.yaxistitle!=''" ,
checkboxInput('parseyaxistitle', 'Parse Y axis Title?', value = FALSE)),
textInput("xaxistitle", label = "X axis Title", value = ""),
conditionalPanel(
condition = "input.xaxistitle!=''" ,
checkboxInput('parsexaxistitle', 'Parse X axis Title?', value = FALSE))
),
tabPanel(
"How To",
hr(),
includeMarkdown(file.path("text", "howto.md"))
) # tabpanel
) # tabsetPanel
), # column3
column(
8,
plotOutput('plot', height = "auto", width = "100%"),
shinyjs::hidden(
actionButton("get_code", "Show Code", icon = icon("code")), br(), br()
)
), # column6
column(
2,
tabsetPanel(
tabPanel(
"Table Options",
numericInput("sigdigits",label = "Significant Digits",value = 2,min=0,max=NA),
sliderInput("tabletextsize", "Table Text Size", min=1, max=12,step=0.5, value=7),
checkboxInput('tabletextcoloroverwrite',
'Overwrite Table Text Color?', value = FALSE),
conditionalPanel(condition = "input.tabletextcoloroverwrite" ,
colourpicker::colourInput("tabletextcolour",
"Table Text Color:",
value= "black",
showColour = "both",allowTransparent=TRUE,
returnName = TRUE)),
sliderInput("plottotableratio", "Plot to Table Ratio", min=1, max=5,
value=4,step=0.25,
animate = FALSE),
selectInput('tableposition','Table Position:',
c("on the right" = "right", "below" = "below", "none" = "none") ),
selectInput( "showtablefacetstrips", "Show Table Facet Strip on:",
choices = c("none","both","y","x"),
selected = c("none"),
multiple = FALSE),
selectInput( "tablefacetswitch", "Table Facet Switch to Near Axis:",
choices = c("both","y","x","none"),
selected = c("both"),
multiple = FALSE),
checkboxInput('showtableyaxisticklabel',
'Show Table y axis ticks/labels ?', value = FALSE),
checkboxInput('reservetablexaxislabelspace', 'Reserve Table x axis space ?',
value = FALSE),
checkboxInput('tablepanelborder',
'Draw Table Panel Borders ?',
value = TRUE)
),#tabpanel
tabPanel(
"Reference Options",
checkboxInput('showrefvalue', 'Show Reference Line?', value = TRUE),
conditionalPanel(condition = "input.showrefvalue" ,
numericInput("refvalue","Reference Line",value = 1,step = 0.1)),
checkboxInput('showrefarea', 'Show Reference Area?', value = TRUE),
conditionalPanel(condition = "input.showrefarea" ,
uiOutput("refarea")),
colourpicker::colourInput("fillrefarea",
"Reference Area Fill:",
value= "#BEBEBE50",
showColour = "both",allowTransparent=TRUE,
returnName = TRUE),
div( actionButton("fillrefareareset", "Reset Reference Area Fill"),
style="text-align: right"),
colourpicker::colourInput("colorrefvalue",
"Reference Line Color:",
value= "black",
showColour = "both",allowTransparent=TRUE,
returnName = TRUE),
div( actionButton("colorrefvaluereset", "Reset Reference Line Color"),
style="text-align: right"),
sliderInput("sizerefvalue", "Reference Line Size:",
min = 0, max = 10, step = 0.1, value = 1),
selectInput('linetyperefvalue',
'Reference Line Linetype:',c("solid","dashed",
"dotted", "dotdash",
"longdash", "twodash","blank"),selected = "dashed")
),#tabpanel
tabPanel(
"Colour/Legend Options/Theme",
colourpicker::colourInput("stripbackgroundfill",
"Strip Background Fill:",
value="#E5E5E5",
showColour = "both",allowTransparent=TRUE, returnName = TRUE),
div( actionButton("stripbackfillreset", "Reset Strip Background Fill"),
style="text-align: right"),
colourpicker::colourInput("y_facet_text_col",
"Facet Text Color Y:",
value="black",
showColour = "both",allowTransparent=TRUE, returnName = TRUE),
colourpicker::colourInput("x_facet_text_col",
"Facet Text Color X:",
value="black",
showColour = "both",allowTransparent=TRUE, returnName = TRUE),
checkboxInput('removestrip', "Show Strip Background",value = TRUE),
conditionalPanel(condition = "!input.colourbyparamname",
colourpicker::colourInput("colourpointrange",
"Point Range Colour:",
value="blue",
showColour = "both",allowTransparent=TRUE, returnName = TRUE),
div( actionButton("colourpointrangereset", "Reset Point Range Colour"),
style="text-align: right")
),
conditionalPanel(condition = "!input.colourbyparamname",
colourpicker::colourInput("colourbsvrange",
"BSV Range Colour:",
value="red",
showColour = "both",allowTransparent=TRUE, returnName = TRUE),
div( actionButton("colourbsvrangereset", "Reset BSV Range Colour"),
style="text-align: right")
),
conditionalPanel(condition = "!input.shapebyparamname",
selectInput(inputId = "shapepointrange",
label = "Point Range Shape:",
choices = c("circle small", "triangle" ,"square","plus","square cross","asterisk",
"square open","cross","diamond open","triangle down open","square cross",
"diamond plus","circle plus","star","star","square plus","circle cross",
"square triangle","diamond","circle","bullet",
"circle filled","square filled","diamond filled","triangle filled",
"triangle down filled"),
selected = "circle small"
)
),
conditionalPanel(condition = "!input.shapebyparamname",
selectInput(inputId = "shapebsvrange",
label = "BSV Range Shape:",
choices = c("circle small", "triangle" ,"square","plus","square cross","asterisk",
"square open","cross","diamond open","triangle down open","square cross",
"diamond plus","circle plus","star","star","square plus","circle cross",
"square triangle","diamond","circle","bullet",
"circle filled","square filled","diamond filled","triangle filled",
"triangle down filled"),
selected = "circle small"
)
),
conditionalPanel(condition = "input.colourbyparamname",uiOutput('userdefinedcolorui')
),
conditionalPanel(condition = "input.shapebyparamname",uiOutput('userdefinedshapeui')
),
sliderInput("sizepointrange", "Point range size",
min = 0, max = 10, step = 0.1, value = 1),
sliderInput("fattenpointrange", "Point range fatten",
min = 0, max = 10, step = 0.1, value = 4),
sliderInput("linewidthpointrange", "Point range linewidth",
min = 0, max = 10, step = 0.1, value = 1),
sliderInput("base_size", "Base size for the theme",
min = 1, max = 30, step = 0.1, value = 22),
sliderInput("height", "Plot Height", min=1080/4, max=1080,
value=900, animate = FALSE),
checkboxInput('theme_benrich', "Apply Ben's Theme",value = FALSE),
conditionalPanel(
condition = "input.theme_benrich",
textInput("custom_table_title", label ="Table Title",
value=""),
sliderInput("table_title_size", "Size for Table Title",
min = 1, max = 30, step = 0.1, value = 15)
) ,
selectizeInput(
'legendposition',
label = "Legend Position",
choices = c("top","bottom","right","none"),
selected = c("top"),
multiple=FALSE)
),#tabpanel
tabPanel(
"Custom Legend Ordering/Spacing",
inline_ui(
numericInput("ncolinterval",label = "Number of columns for the Interval legend",
value = 1,min=NA,max=NA,width='120px')),
inline_ui(
numericInput("ncolshape",label = "Number of columns for the shape legend",
value = 1,min=NA,max=NA,width='120px')),
selectizeInput(
'legendordering',
label = paste("Drag/Drop to reorder","Colour, Ref, Area Legends"),
choices = c("pointinterval","ref","area","shape"),
selected = c("pointinterval","ref","area","shape"),
multiple=TRUE, options = list(
plugins = list('drag_drop')
)),
checkboxInput('legendshapereverse',
'Reverse the order of shape legend items ?',value = TRUE),
checkboxInput('legendcoloreverse',
'Reverse the order of colour legend items ?',value = FALSE),
sliderInput("legendspacex", "Multiplier for Space between Legends",
min = 0, max = 1.5, step = 0.1, value = 1),
numericInput("panelspacing",label = "Strip Panel Spacing",
value = 5.5,min=0,step=0.1,
max=20,width='100%'),
inline_ui(
numericInput("margintop",label = "Plot Top Margin",
value = 0,min=0,max=NA,width='80px')),
inline_ui(
numericInput("tabletop",label = "Table Top Margin",
value = 0,min=0,max=NA,width='80px')),
inline_ui(
numericInput("legendtop",label = "Legend Top Margin",
value = 0,min=0,max=NA,width='80px')),
inline_ui(
numericInput("marginleft",label = "Plot Left Margin",
value = 5.5,min=0,max=NA,width='80px')),
inline_ui(
numericInput("tableleft",label = "Table Left Margin",
value = 5.5,min=0,max=NA,width='80px')),
inline_ui(
numericInput("legendleft",label = "Legend Left Margin",
value = 5.5,min=0,max=NA,width='80px')),
inline_ui(
numericInput("marginright",label = "Plot Right Margin",
value = 5.5,min=0,max=NA,width='80px')),
inline_ui(
numericInput("tableright",label = "Table Right Margin",
value = 5.5,min=0,max=NA,width='80px')),
inline_ui(
numericInput("legendright",label = "Legend Right Margin",
value = 5.5,min=0,max=NA,width='80px')),
inline_ui(
numericInput("marginbottom",label = "Plot Bottom Margin",
value = 0,min=0,max=NA,width='80px')),
inline_ui(
numericInput("tablebottom",label = "Table Bottom Margin",
value = 0,min=0,max=NA,width='80px')),
inline_ui(
numericInput("legendbottom",label = "Legend Bottom Margin",
value = 0,min=0,max=NA,width='80px'))
),#tabpanel
tabPanel(
"Custom Legend Text",
textInput("customplottitle", label ="Plot Title",value = ""),
textInput("customcolourtitle", label ="Pointinterval Legend text",
value="Median (points)\\n95% CI (horizontal lines)"),
textInput("customcolourtitletext", label ="Pointinterval Legend title",
value=""),
textInput("customshapetitletext", label ="Shape Legend title",
value=""),
textInput("custombsvtitle", label ="BSV Legend text",
value="BSV (points)\\nPrediction Intervals (horizontal lines)"),
textInput("customlinetypetitle", label ="Ref Legend text",
value="Reference (vertical line)\\nClinically relevant limits (colored area)"),
textInput("customfilltitle", label ="Area Legend text",
value="Reference (vertical line)\\nClinically relevant limits (colored area)"),
checkboxInput('combineareareflegend',
'Combine Ref and Area Legends if they share the same text ?',value = TRUE),
checkboxInput('combineintervalshapelegend',
'Combine Interval and Shape Legends?',value = TRUE),
sliderInput("legendtitlesize", "Text size of legend(s) title(s) ",
min=1, max=32, value= 16, step=0.5)
)#tabpanel
) # tabsetpanel
) # closes the column 3
)# fluidrow
)#fluidpage
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