API for sohrabsa/ddclone
Joint statistical inference of clonal populations from single cell and bulk tumour sequencing data
| Global functions | |
|---|---|
| append.traj | Source code |
| beta.binomial | Source code |
| cached.pyclone.dd.crp.likelihood | Source code |
| cached.resample.alpha | Source code |
| cached.resmple.decay.fn.param | Source code |
| cached.sample.pyclone.cluster.parameters | Source code |
| connections | Source code |
| cosineDist | Source code |
| ddclone | Man page Source code |
| ddcrp.gibbs | Source code |
| driver | Source code |
| entropy | Source code |
| estimatePointClustering | Man page Source code |
| estimatePointPhi | Man page Source code |
| euclidean.dist | Source code |
| evaluate.clustering | Man page Source code |
| exp.decay | Source code |
| exp.decay.s | Source code |
| generic.psi | Source code |
| genotype.a | Source code |
| genotype.b | Source code |
| genotype.c | Source code |
| genotype.mu | Source code |
| genotypeFromCN | Source code |
| get.base.path | Source code |
| get.path | Source code |
| identity.s | Source code |
| indexed.window.decay | Source code |
| input.based.dist.fn | Source code |
| jaccardDist | Source code |
| link.dist.fn | Source code |
| log.beta.binomial | Source code |
| log.sum | Source code |
| logistic | Source code |
| logistic.decay | Source code |
| logistic.decay.s | Source code |
| make.cached.alpha | Source code |
| make.cached.decay | Source code |
| make.cached.genotype.aware.likelihood | Source code |
| make.ddclone.input | Man page Source code |
| make.psi.priors | Source code |
| make.pyclone.input | Source code |
| manhattan.dist | Source code |
| matrix.dist.fn | Source code |
| mean.size | Source code |
| modified.jaccard.dist | Source code |
| modified.jaccard.dist.vector | Source code |
| msg | Source code |
| mutual.info.score | Source code |
| ncomp.summary | Source code |
| noushdarou.eta | Source code |
| pick.variant.genotype | Source code |
| pyclone.eta | Source code |
| pyclone.gamma.params | Source code |
| pyclone.generic.eta | Source code |
| r.beta.binomail | Source code |
| relabel.clusters | Man page Source code |
| resample.neal.precision | Source code |
| resample.pyclone.precision | Source code |
| safelog | Source code |
| sample.gamma.proposal | Source code |
| sample.psi | Source code |
| sample.psi.with.gV | Source code |
| seq.dist | Source code |
| subtract.dist | Source code |
| test.genereic.eta | Source code |
| tnbc.xenograft.SA494.T | Man page |
| tnbc.xenograft.SA494.X4 | Man page |
| tnbc.xenograft.SA501.X1 | Man page |
| tnbc.xenograft.SA501.X2 | Man page |
| tnbc.xenograft.SA501.X4 | Man page |
| window.decay | Source code |
| window.decay.s | Source code |
