Files in sohrabsa/ddclone
Joint statistical inference of clonal populations from single cell and bulk tumour sequencing data
.Rbuildignore
.Rhistory
.Rproj.user/1240FD37/cpp-definition-cache
.Rproj.user/1240FD37/pcs/debug-breakpoints.pper
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.gitignore
DESCRIPTION
NAMESPACE
R/data.R
R/ddclone.R
R/ddcrp-inference.R
R/decay.R
R/driver.R
R/env-setup.R
R/genotype.R
R/helper-math.R
R/helper.R
R/summaries.R
README.md
data/dollo.10.48.0.f0.gl0.rda
data/dollo.10.48.1.f0.gl0.rda
data/dollo.10.48.2.f0.gl0.rda
data/dollo.10.48.3.f0.gl0.rda
data/dollo.10.48.4.f0.gl0.rda
data/dollo.10.48.5.f0.gl0.rda
data/dollo.10.48.6.f0.gl0.rda
data/dollo.10.48.7.f0.gl0.rda
data/dollo.10.48.8.f0.gl0.rda
data/dollo.10.48.9.f0.gl0.rda
data/gd.10.48.0.f0.gl0.u.tips.ADO.00.doublet.00.m.50.nus.0.da.rda
data/gd.10.48.1.f0.gl0.u.tips.ADO.00.doublet.00.m.50.nus.0.da.rda
data/gd.10.48.2.f0.gl0.u.tips.ADO.00.doublet.00.m.50.nus.0.da.rda
data/gd.10.48.3.f0.gl0.u.tips.ADO.00.doublet.00.m.50.nus.0.da.rda
data/gd.10.48.4.f0.gl0.u.tips.ADO.00.doublet.00.m.50.nus.0.da.rda
data/gd.10.48.5.f0.gl0.u.tips.ADO.00.doublet.00.m.50.nus.0.da.rda
data/gd.10.48.6.f0.gl0.u.tips.ADO.00.doublet.00.m.50.nus.0.da.rda
data/gd.10.48.7.f0.gl0.u.tips.ADO.00.doublet.00.m.50.nus.0.da.rda
data/gd.10.48.8.f0.gl0.u.tips.ADO.00.doublet.00.m.50.nus.0.da.rda
data/gd.10.48.9.f0.gl0.u.tips.ADO.00.doublet.00.m.50.nus.0.da.rda
data/tnbc.xenograft.SA494.T.rda
data/tnbc.xenograft.SA494.X4.rda
data/tnbc.xenograft.SA501.X1.rda
data/tnbc.xenograft.SA501.X2.rda
data/tnbc.xenograft.SA501.X4.rda
ddclone.Rproj
demo/example.R
inst/extdata/dollo.10.48.4.f0.gl0-u.dat
inst/extdata/inputs_simulated.xlsx
man/ddclone.Rd
man/estimatePointClustering.Rd
man/estimatePointPhi.Rd
man/evaluate.clustering.Rd
man/make.ddclone.input.Rd
man/relabel.clusters.Rd
man/tnbc.xenograft.SA494.T.Rd
man/tnbc.xenograft.SA494.X4.Rd
man/tnbc.xenograft.SA501.X1.Rd
man/tnbc.xenograft.SA501.X2.Rd
man/tnbc.xenograft.SA501.X4.Rd
vignettes/ddclone_quick_guide.Rmd
