evaluate.clustering: Computes the V-measure for clustering assessment.

In sohrabsa/ddclone: Joint statistical inference of clonal populations from single cell and bulk tumour sequencing data

Description

See Rosenberg A, Hirschberg J. V-Measure: A Conditional Entropy-Based External Cluster Evaluation Measure. InEMNLP-CoNLL 2007 Jun 28 (Vol. 7, pp. 410-420). Based on implentation in http://pydoc.net/Python/scikit-learn/0.14.1/sklearn.metrics.cluster.supervised/

Usage

evaluate.clustering(labels_true, labels_pred)

Arguments

labels_true	vector of true clustering assignments where labels_true[[i]] is the clustering assignment of datapoint i
labels_pred	same as above, except for predicted clustering assignments

Value

A list the containing the v_measure_score, and its components, homogeneity, and completeness.

sohrabsa/ddclone documentation built on May 30, 2019, 6:08 a.m.