Man pages for sohrabsa/ddclone
Joint statistical inference of clonal populations from single cell and bulk tumour sequencing data
| ddclone | Runs the ddClone MCMC-based inference algorithm over the... |
| estimatePointClustering | Computes a point estimate (using MAXPEAR method) for... |
| estimatePointPhi | Computes a Monte Carlo estimate for the cellular prevalences... |
| evaluate.clustering | Computes the V-measure for clustering assessment. |
| make.ddclone.input | Generate a ddClone input object from bulk allele counts and... |
| relabel.clusters | Computes human friendly labels given a numeric vector... |
| tnbc.xenograft.SA494.T | Tripple Negative breast cancer Xenograft, sample SA494,... |
| tnbc.xenograft.SA494.X4 | Tripple Negative breast cancer Xenograft, sample SA494,... |
| tnbc.xenograft.SA501.X1 | Tripple Negative breast cancer Xenograft, sample SA501,... |
| tnbc.xenograft.SA501.X2 | Tripple Negative breast cancer Xenograft, sample SA501,... |
| tnbc.xenograft.SA501.X4 | Tripple Negative breast cancer Xenograft, sample SA501,... |
