Man pages for songxiaoyu/iProFun
An integrative analysis tool to screen for Proteogenomic Functional traits perturbed by DNA alterations
| cnv | Sample Copy Number Alternation data |
| cov | Sample covariate data |
| Estep | Internal function for EM algorithm E step |
| fitFDist | Internal function for calculating empirical bayes estimates |
| iProFun.detection | iProFun detection using multiple criteria |
| iProFun.eFDR | iProFun eFDR assessment based on permutation for multiple... |
| iProFun.eFDR.1y | iProFun eFDR assessment for one outcome data type. |
| iProFun.FWER | Calculate FWER |
| iProFun.prob | Calculating posterior probabilities of association patterns |
| iProFun.reg | Linear regression on all outcome data types |
| iProFun.reg.1y | Linear regression on one outcome data type |
| iProFun.reg.table | Reformat the regression output into a table format. Each row... |
| iProFun.sum.prob.1y | Summarize the association probabilities for an outcome. |
| Mstep | Internal function for EM algorithm M step |
| multi.omic.reg.summary | Reformat regression summaries |
| mut | Sample Mutation data |
| phospho | Sample Phospho data |
| protein | Sample Protein data |
| rna | Sample mRNA data |
