iProFun.FWER: Calculate FWER
In songxiaoyu/iProFun: An integrative analysis tool to screen for Proteogenomic Functional traits perturbed by DNA alterations
View source: R/iProFun.detection.R
iProFun.FWER R Documentation
Calculate FWER
Description
This function calculates FWER across all the outcome variables for the same predictor data type
(e.g. mutation), directly from regression results without considering posterior probabilities of association patterns.
This strategy is preferred for data types that have few genes that cannot reliably infer association patterns.
Usage
iProFun.FWER(reg.all, FWER.Index = 0)
Arguments
reg.all
Linear regression analysis summaries from iProFun.reg.
FWER.Index
Index the predictor data types that calculate FWER directly
Value
It returns original p-values and FWER with and without filter
pvalue:
The p-value of linear regression with Student's t distribution
FWER:
The FWER with Bonferroni correction for all genes
xName:
The gene name of the predictors
songxiaoyu/iProFun documentation built on Dec. 8, 2022, 3:54 p.m.
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View source: R/iProFun.detection.R
| iProFun.FWER | R Documentation |
Calculate FWER
Description
This function calculates FWER across all the outcome variables for the same predictor data type (e.g. mutation), directly from regression results without considering posterior probabilities of association patterns. This strategy is preferred for data types that have few genes that cannot reliably infer association patterns.
Usage
iProFun.FWER(reg.all, FWER.Index = 0)
Arguments
reg.all |
Linear regression analysis summaries from iProFun.reg. |
FWER.Index |
Index the predictor data types that calculate FWER directly |
Value
It returns original p-values and FWER with and without filter
pvalue: |
The p-value of linear regression with Student's t distribution |
FWER: |
The FWER with Bonferroni correction for all genes |
xName: |
The gene name of the predictors |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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