API for statOmics/tradeSeq
trajectory-based differential expression analysis for sequencing data

Global functions
.allWaldStatGAMFC Source code
.assignCells Source code
.associationTest Source code
.associationTest_conditions Source code
.associationTest_conditions_original Source code
.associationTest_original Source code
.checks Source code
.clusterExpressionPatterns Source code
.clusterExpressionPatterns_conditions Source code
.conditionTest Source code
.construct_contrast_matrix_conditions Source code
.diffEndTest Source code
.earlyDETest Source code
.evaluateK Source code
.findKnots Source code
.find_conditions Source code
.fitGAM Source code
.getFoldChanges Source code
.getModelReference Source code
.getPredictCustomPointDf Source code
.getPredictEndPointDf Source code
.getPredictRangeDf Source code
.getPredictStartPointDf Source code
.get_offset Source code
.patternDf Source code
.patternDfPairwise Source code
.plotGeneCount Source code
.plotSmoothers Source code
.plotSmoothers_conditions Source code
.plotSmoothers_sce Source code
.predictSmooth Source code
.predictSmooth_conditions Source code
.startVsEndTest Source code
associationTest Man page
associationTest,SingleCellExperiment-method Man page
associationTest,list-method Man page
celltype Man page
clusterExpressionPatterns Man page
clusterExpressionPatterns,SingleCellExperiment-method Man page
clusterExpressionPatterns,list-method Man page
conditionTest Man page
conditionTest,SingleCellExperiment-method Man page
countMatrix Man page
crv Man page
diffEndTest Man page
diffEndTest,SingleCellExperiment-method Man page
diffEndTest,list-method Man page
earlyDETest Man page
earlyDETest,SingleCellExperiment-method Man page
earlyDETest,list-method Man page
evaluateK Man page
evaluateK,SingleCellExperiment-method Man page
evaluateK,dgCMatrix-method Man page
evaluateK,matrix-method Man page
fitGAM Man page
fitGAM,SingleCellExperiment-method Man page
fitGAM,dgCMatrix-method Man page
fitGAM,matrix-method Man page
gamList Man page
getEigenStatGAM Source code
getEigenStatGAMFC Source code
getSmootherPvalues Man page Source code
getSmootherTestStats Man page Source code
nknots Man page
nknots,SingleCellExperiment-method Man page
nknots,list-method Man page
patternTest Man page
patternTest,SingleCellExperiment-method Man page
patternTest,list-method Man page
plotGeneCount Man page
plotGeneCount,PseudotimeOrdering-method Man page
plotGeneCount,SingleCellExperiment-method Man page
plotGeneCount,SlingshotDataSet-method Man page
plotSmoothers Man page
plotSmoothers,SingleCellExperiment-method Man page
plotSmoothers,gam-method Man page
plot_evalutateK_results Man page Source code
predictCells Man page
predictCells,SingleCellExperiment-method Man page
predictCells,list-method Man page
predictGAM Source code
predictSmooth Man page
predictSmooth,SingleCellExperiment-method Man page
predictSmooth,list-method Man page
sds Man page
startVsEndTest Man page
startVsEndTest,SingleCellExperiment-method Man page
startVsEndTest,list-method Man page
waldTestFC Source code
statOmics/tradeSeq documentation built on Aug. 11, 2022, 6:59 p.m.