predictCells: predictCells

In statOmics/tradeSeq: trajectory-based differential expression analysis for sequencing data

predictCells

Description

Get fitted values for each cell.

Usage

predictCells(models, ...)

## S4 method for signature 'SingleCellExperiment'
predictCells(models, gene)

## S4 method for signature 'list'
predictCells(models, gene)

Arguments

models	Either the SingleCellExperiment object obtained after running fitGAM, or the specific GAM model for the corresponding gene, if working with the list output of tradeSeq.
...	parameters including:
gene	Gene name of gene for which to extract fitted values.

Details

Using the gene expression model of tradeSeq available at https://www.nature.com/articles/s41467-020-14766-3#Sec2. the output of predictCells returns the \eta_{gi} value for each cell.

Value

A vector of fitted values.

Examples

data(gamList, package = "tradeSeq")
predictCells(models = gamList, gene = 1)

statOmics/tradeSeq documentation built on Jan. 19, 2024, 8:26 p.m.