Man pages for statdivlab/rre
Replicate Richness Estimator
| bisection_search | helper function for direct_optimise |
| cv_replicates | Method 2 and Method 4 |
| direct_optimise | Maximum likelihood estimate for single frequency count table |
| direct_optimise_replicates | Direct maximum likelihood optimizer for a list of frequency... |
| fixed_lambda_mle | Optimizing the likelihood with a fixed lambda value |
| get_cc_ks_fs | Get formatted frequency count table data |
| get_cc_max | Returns the maximum observed richness for a FCT list. |
| gof_criterion | Method 3: Goodness of fit criterion |
| grid_search | helper function for direct_optimise |
| loglike_single_fixed_ccc | Likelihood function written in R for reference |
| log_marginal_negative_binomial | Helper for likelihood. |
| make_frequency_count_table | Creates a frequency count table |
| minimum_subset_distance | Method 1: Minimum subset distance |
| nb_fct_simulation | Negative binomial frequency count table simulation |
| optimise_fixed_c | helper function called by grid_search and bisection_search |
| replicate_likelihood | gamma-Poisson log likelihood for replicates |
| single_fct_subsets | Supplemental method: single FCT subset estimates |
| unregularized_mle | Method 0: Unregularized MLE |
