fixed_lambda_mle: Optimizing the likelihood with a fixed lambda value

Description Usage Arguments Details

View source: R/tuning_proposals.R

Description

A wrapper function for direct_optimise_replicates to standarize output for simulations.

Usage

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fixed_lambda_mle(fct_list, starts = data.frame(alpha = c(0.01, 0.01),
  delta = c(0.01, 1e-04)), lambda = 0, multiplier = 20,
  c_seq_length = 96, ...)

Arguments

fct_list

A list of frequency count tables, assumed to be biological replicates.

starts

Starting values for alpha and delta in the MLE procedure.

lambda

The fixed lambda value to run the MLE procedure with.

multiplier

The upper bound of the grid of candidate C values, stated in terms of a multiple of the maximum observed richess (c). For example if c is 50 and multiplier is 10, the method evaluates the likelihood in a C grid from 50 to 500.

c_seq_len

The number of points in the C grid.

Details

A wrapper function for direct_optimise_replicates to standarize output for simulations.


statdivlab/rre documentation built on Nov. 5, 2019, 9:20 a.m.