Man pages for statnet/EpiModelHPC
EpiModel Extensions for High-Performance Computing
| check_cp | Checks for Checkpointed Rdata Files |
| EpiModelHPC-package | EpiModel Extensions for High-Performance Computing |
| get_scenarios_batches_infos | Helper function to access the file name elements of scenarios |
| get_scenarios_tibble_infos | Helper function to access the infos on merged scenarios... |
| initialize_cp | Initializes Network Model after Checkpointing |
| make_calibrated_scenario | Make an EpiModel scenario using the result of an 'swfcalib'... |
| make_save_elements | Create the 'save_elements' vector for... |
| merge_netsim_scenarios | Create a Single Sim File per Scenarios Using the Files From... |
| merge_netsim_scenarios_tibble | Create a Single Sim File per Scenarios Using the Files From... |
| merge_simfiles | Save Simulation Data from Stochastic Network Models |
| netsim_hpc | Stochastic Network Models on High-Performance Computing... |
| netsim_run_one_scenario | Run one 'netsim' call with a scenario and saves the results... |
| netsim_run_swfcalib_scenario | Run one 'netsim' call with the result of an 'swfcalib'... |
| netsim_scenarios | Function to run EpiModel network simulations with scenarios |
| netsim_scenarios_setup | Helper function to create the parameters for... |
| netsim_swfcalib_output | Function to run an EpiModel sim with the result of an... |
| netsim_swfcalib_output_setup | Helper function to create the parameters for... |
| process_simfiles | Process sub-job simulation files saved as a series of Rdata... |
| pull_env_vars | Pull Standard Environmental Variables in Slurm Jobs |
| save_cpdata | Saves for Network Simulation Rdata Files for Checkpointing |
| savesim | Save Simulation Data from Stochastic Network Models |
| sbatch_master | Create sbatch Bash Shell Script with Parameter Combination |
| step_tmpl_merge_netsim_scenarios | Step Template to Create a Single Sim File per Scenarios Using... |
| step_tmpl_merge_netsim_scenarios_tibble | Step Template to Create a Single Sim File per Scenarios Using... |
| step_tmpl_netsim_scenarios | Step template to run EpiModel network simulations with... |
| step_tmpl_netsim_swfcalib_output | Step template to run sims with the result of an 'swfcalib'... |
| step_tmpl_renv_restore | Step template to update a project 'renv' |
| swfcalib_proposal_to_scenario | Convert an swfcalib Proposal into an EpiModel Scenario |
| swf_configs_hyak | Preset of Configuration for the HYAK Cluster |
| swf_configs_rsph | Preset of Configuration for the RSPH Cluster |
| verbose.hpc.net | Custom Progress Print Module for HPC Workflow |
