process_simfiles: Process sub-job simulation files saved as a series of Rdata...

In statnet/EpiModelHPC: EpiModel Extensions for High-Performance Computing

Process sub-job simulation files saved as a series of Rdata files.

Description

Wraps the merge_simfiles function to merge all sub-job Rdata files and saves into a single output file, with the option to delete the sub-job files.

Usage

process_simfiles(
  simno = NA,
  indir = "data/",
  outdir = "data/",
  vars = NULL,
  truncate.at = NULL,
  min.n,
  nsims,
  compress = "xz",
  delete.sub = TRUE,
  verbose = FALSE
)

Arguments

simno	Simulation number to process.
indir	File directory relative to working directory where simulation files are stored.
outdir	File directory relative to working directory where simulation files should be saved.
vars	Argument passed to merge_simfiles.
truncate.at	Left-truncates a simulation epidemiological summary statistics and network statistics at a specified time step.
min.n	Integer value for the minimum number of simulation files to be eligible for processing.
nsims	Total number of simulations across all sub-jobs.
compress	Argument passed to save.
delete.sub	Delete sub-job files after merge and saving.
verbose	Logical, print progress to console.

statnet/EpiModelHPC documentation built on April 13, 2025, 1 a.m.