Files in statnet/PrEP-for-ASMM-and-adult-MSM

Network-Based Epidemic Modeling of HIV Transmission among MSM and ASMM populations

R/EpiModelHIV-package.R R/ErgmTerms.R R/RcppExports.R R/estimation.R R/mod.FU.elements.R R/mod.acts.R R/mod.agemix.R R/mod.aging.camplc.R R/mod.births.camplc.R R/mod.cd4.R R/mod.condoms.R R/mod.death.R R/mod.disclose.R R/mod.initialize.camplc.R R/mod.out.debut.R R/mod.position.R R/mod.prep.R R/mod.prep.adol.R R/mod.prevalence.R R/mod.progress.R R/mod.riskhist.R R/mod.riskhist.adol.R R/mod.simnet.R R/mod.test.R R/mod.trans.R R/mod.tx.R R/mod.update.PrEP.adherence.R R/mod.update.aiclass.R R/mod.update.roleclass.R R/mod.verbose.R R/mod.vl.R R/params.R R/print.R R/utilities.R README.md man/EpiModelHIV.campcl-package.Rd man/FU_elements_camplc.Rd man/InitErgmTerm.absdiffby.Rd man/InitErgmTerm.absdiffnodemix.Rd man/acts_msm.Rd man/agemix_campcl.Rd man/aging_camplc.Rd man/aging_het.Rd man/aging_msm.Rd man/apportion_lr.Rd man/assign_degree.Rd man/base_nw_msm.Rd man/births_camplc.Rd man/calc_nwstats_msm.Rd man/cd4_het.Rd man/condoms_msm.Rd man/control_cl.Rd man/deaths_het.Rd man/deaths_msm.Rd man/disclose_msm.Rd man/edges_correct_msm.Rd man/get_args.Rd man/get_sims2.Rd man/init_ccr5_msm.Rd man/init_cl.Rd man/init_status_msm.Rd man/initialize_camplc.Rd man/initialize_het.Rd man/out_debut_camplc.Rd man/param_cl.Rd man/position_msm.Rd man/prep_adherence_trans.Rd man/prep_adol.Rd man/prep_msm.Rd man/prevalence_het.Rd man/prevalence_msm.Rd man/progress_msm.Rd man/reallocate_pcp.Rd man/reinit_het.Rd man/reinit_msm.Rd man/remove_bad_roles_msm.Rd man/riskhist_adol.Rd man/riskhist_msm.Rd man/roleclass_trans.Rd man/simnet_msm.Rd man/sourceDir.Rd man/test_msm.Rd man/trans_het.Rd man/trans_msm.Rd man/truncate_sim.Rd man/tx_msm.Rd man/update_aiclass_msm.Rd man/verbose_het.Rd man/verbose_msm.Rd man/vl_het.Rd man/vl_msm.Rd scenarios/scripts/InstallStack.R scenarios/scripts/Installation.R scenarios/scripts/burnin/ProcessBurnin.R scenarios/scripts/burnin/sim.burn.abc.cl.post.R scenarios/scripts/estimation/01.setup.R scenarios/scripts/estimation/02.estim.R scenarios/scripts/followup/Age dist plots.R scenarios/scripts/followup/Age mixing analysis.R scenarios/scripts/followup/Boxplots_NIA_PIA_NNT.R scenarios/scripts/followup/PrEP_counts.R scenarios/scripts/followup/Prevalence plots_10.R scenarios/scripts/followup/Prevalence plots_40.R scenarios/scripts/followup/Prevalence plots_NMG.R scenarios/scripts/followup/master.R scenarios/scripts/followup/sim.cl.fu.R scenarios/scripts/followup/sim.fu.R scenarios/scripts/followup/table epi with CrI.R scenarios/scripts/followup/table_NIA_PIA_NNT.R scenarios/scripts/followup/table_age at infection.R scenarios/scripts/followup/table_incidence and time positive.R scenarios/scripts/simtest.fu.R scenarios/scripts/simtestscript.R scenarios/sim.burn.abc.cl.R scenarios/sim.burn.cl.R scenarios/sim1.R scenarios/sim2.R scenarios/sim3.R scenarios/sim4.R scenarios/sim5.R scenarios/sim6.R