API for stephenslab/flashr2
Empirical Bayes Matrix Factorization

Global functions
NM_posterior_e_loglik Source code
add_ebnm_ash_defaults Source code
add_ebnm_fn_defaults Source code
add_ebnm_pn_defaults Source code
add_factors_from_data Source code
add_l_sampler_params Source code
calc_diff Source code
calc_ebnm_f_args Source code
calc_ebnm_l_args Source code
calc_max_chg Source code
calc_obj_diff Source code
calc_update_vals Source code
compute_precision Source code
compute_summary_statistics Source code
construct_flash_object Source code
e_loglik Source code
e_loglik_from_R2_and_tau Source code
ebnm_ash Source code
ebnm_pl Source code
ebnm_pn Source code
find_col_blocks Source code
flash Man page Source code
flash_add_factors_from_data Man page Source code
flash_add_fixed_factors Man page Source code
flash_add_fixed_loadings Man page Source code
flash_add_greedy Man page Source code
flash_add_lf Source code
flash_backfit Man page Source code
flash_backfit_workhorse Source code
flash_combine Source code
flash_f_sampler Source code
flash_fill Man page Source code
flash_get_R Source code
flash_get_R2 Source code
flash_get_R2k Source code
flash_get_R_withmissing Source code
flash_get_Rk Source code
flash_get_f Source code
flash_get_fitted_values Source code
flash_get_k Source code
flash_get_l Source code
flash_get_ldf Source code
flash_get_n Source code
flash_get_nfactors Source code
flash_get_objective Source code
flash_get_p Source code
flash_get_pve Source code
flash_greedy_workhorse Source code
flash_init_fn Source code
flash_init_lf Source code
flash_init_null Source code
flash_init_udv Source code
flash_l_sampler Source code
flash_lf_sampler_fixedf Source code
flash_lf_sampler_fixedl Source code
flash_optimize_single_fl Source code
flash_r1 Source code
flash_sampler Man page Source code
flash_set_data Man page Source code
flash_single_l_sampler Source code
flash_subset_data Source code
flash_subset_f Source code
flash_subset_l Source code
flash_transpose Source code
flash_transpose_data Source code
flash_update_precision Source code
flash_update_single_factor Source code
flash_update_single_fl Source code
flash_update_single_loading Source code
flash_zero_out_factor Man page Source code
get_Yorig Source code
get_flash_fit Source code
get_flash_fit_history Source code
handle_LL Source code
handle_data Source code
handle_ebnm_fn Source code
handle_ebnm_param Source code
handle_f Source code
handle_fix Source code
handle_init_fn Source code
handle_k Source code
handle_kset Source code
handle_var_type Source code
is_max_chg_needed Source code
is_obj_needed Source code
is_tiny_fl Source code
mle_precision_by_column Source code
mle_precision_constant Source code
normalize_lf Source code
perform_nullcheck Source code
plot.flash Man page Source code
plot_kset Source code
plot_pve Source code
print.flash Man page Source code
sampler Source code
stopping_criterion_string Source code
udv_random Source code
udv_si Source code
udv_si_svd Source code
udv_svd Source code
verbose_backfit_announce Source code
verbose_greedy_next_fl Source code
verbose_nullcheck_announce Source code
verbose_nullcheck_complete Source code
verbose_nullcheck_delete_fl Source code
verbose_nullcheck_keep_fl Source code
verbose_obj_decrease_warning Source code
verbose_obj_table_entry Source code
verbose_obj_table_header Source code
verbose_sparsity Source code
zero_out_factor Source code
stephenslab/flashr2 documentation built on Sept. 26, 2018, 4:47 a.m.