Files in steveped/BMEA
Bayesian Modelling for Exon Arrays
.Rbuildignore
.gitignore
BMEA.Rproj
DESCRIPTION
NAMESPACE
R/AffymetrixCelSetList.R
R/BMEA-internal.R
R/assignBgPriors.R
R/boxplotPhi.R
R/clearNodes.R
R/createCelHeader.R
R/defineGcBins.R
R/defineMatBins.R
R/extractBmeaArray.R
R/fitBackgroundParameters.R
R/fitBmea.R
R/fitBmea.Snow.R
R/fitBmeaBatch.R
R/fitBmeaSingle.R
R/gcCounts.R
R/getLogFC.R
R/getPhiLogFC.R
R/isBMEA.R
R/mergeNodes.R
R/runMCMC.BMEA.R
R/setMatMatrix.R
R/summariseChains.R
R/unitLine.R
R/units2bed.R
R/volcanoPlot.BMEA.R
R/writeBmeaBatch.R
R/zScore.R
README.md
man/AffymetrixCelSetList.Rd
man/BMEA-package.Rd
man/assignBgPriors.Rd
man/boxplotPhi.Rd
man/clearNodes.Rd
man/createCelHeader.Rd
man/defineGcBins.Rd
man/defineMatBins.Rd
man/extractBmeaArray.Rd
man/fitBackgroundParameters.Rd
man/fitBmea.Rd
man/fitBmea.Snow.Rd
man/fitBmeaBatch.Rd
man/fitBmeaSingle.Rd
man/gcCounts.Rd
man/getLogFC.Rd
man/getPhiLogFC.Rd
man/isBMEA.Rd
man/mergeNodes.Rd
man/runMCMC.BMEA.Rd
man/setMatMatrix.Rd
man/summariseChains.Rd
man/unitLine.Rd
man/units2bed.Rd
man/volcanoPlot.BMEA.Rd
man/writeBmeaBatch.Rd
man/zScore.Rd
src/BMEA.so
src/bmea.h
src/getLogFC_C.c
src/getPhiLogFC_C.c
src/runSingleExonUniformMCMC.c
src/runUniformMCMC.c
src/runUniformMCMCexpProbe.c
src/runUniformMCMCnoProbe.c
src/sample_S.c
src/summariseMCMC.c
src/truncnorm.c
vignettes/bmeaVignette.R
vignettes/bmeaVignette.Rmd
vignettes/bmeaVignette.html
