Description Usage Arguments Details See Also
Draws a volcano plot incorporating the possiblity of points with an infinite value on the y-axis.
1 2 3 | volcanoPlot.BMEA(data, plotVal = "mean", cont = 1, hLight = NULL,
hLightCol = "blue", hLight.lab.cex = 0.7, hLight.pt.cex = 1,
hLight.n = 10, pch = 16, cex = 0.35, main, ...)
|
data |
the results from analysis with the BMEA model.
Can be an |
plotVal |
determines which summary statistic to plot. Defaults to mean, but can also accept median or any other saved summary statistic named in the array |
cont |
determines which contrast to plot. Equates to the the third dimension of any BmeaArray provided |
hLight |
specify any points to be highlighted by unit ID |
hLightCol |
the colour to use when highlighting points |
hLight.lab.cex |
the scaling factor for point labelling |
hLight.pt.cex |
the scaling factor to use when highlighting points |
hLight.n |
the number of points to highlight |
pch |
see |
cex |
see |
main |
see |
... |
any further parameters to be passed to |
Will draw a volcano plot from the results. Only a single contrast can be plotted,
and any requested points will be highlighted, up to the maximum specified by hLight.n
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