AffymetrixCelSetList: Make a list object where each element is an AffymetrixCelSet

In steveped/BMEA: Bayesian Modelling for Exon Arrays

Description

Used for storing values for parameters and contrasts under the BMEA model

Usage

AffymetrixCelSetList(celSet, type, tags, path = NULL)

Arguments

celSet	The parent celSet from which the stored parameters are derived
type	The type of values stored. Can take the values "backgroundPriors", "contrastData" or"modelData"
tags	Specifies which tags have been added to the parentName. See Details for more information
path	Where to look for the data

Details

For each type of celSetList, only a limited number of tags are valid:

• type=backgroundPriorstags can be QN, MAT, GC, RMA, GC-RMA or the like

• type=contrastDatatags can only be logFC of phiLogFC

• type=modelDatatags can be any of the model parameter names (i.e. S, sigmaS, c, mu, sigmaMu, p, sigmaP, phi)

By default, all files found with the correct specification will be included in the list object

The cdf will be assigned automatically, i.e. BG lists will use the same as the celSet, contrasts will use the monocell CDF & model parameters will use the full (S & p) or monocell (sigmaS, c, mu, sigmaMu, sigmaP, phi) respectively

Value

A list of AffymetrixCelSet objects

steveped/BMEA documentation built on May 30, 2019, 5:38 p.m.