Description Usage Arguments Details Value
Used for storing values for parameters and contrasts under the BMEA model
1 | AffymetrixCelSetList(celSet, type, tags, path = NULL)
|
celSet |
The parent celSet from which the stored parameters are derived |
type |
The type of values stored. Can take the values "backgroundPriors", "contrastData" or"modelData" |
tags |
Specifies which tags have been added to the parentName. See Details for more information |
path |
Where to look for the data |
For each type of celSetList, only a limited number of tags are valid:
type=backgroundPriorstags can be QN, MAT, GC, RMA, GC-RMA or the like
type=contrastDatatags can only be logFC of phiLogFC
type=modelDatatags can be any of the model parameter names (i.e. S, sigmaS, c, mu, sigmaMu, p, sigmaP, phi)
By default, all files found with the correct specification will be included in the list object
The cdf will be assigned automatically, i.e. BG lists will use the same as the celSet, contrasts will use the monocell CDF & model parameters will use the full (S & p) or monocell (sigmaS, c, mu, sigmaMu, sigmaP, phi) respectively
A list of AffymetrixCelSet objects
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