extractBmeaArray: Extract the data from an AffymetrixCelSetList as an array or...
In steveped/BMEA: Bayesian Modelling for Exon Arrays

Description Usage Arguments Details Value

Extract the data saved to an AffymetrixCelSetList for a given set of units

1 2	extractBmeaArray(celSetList, units = NULL, which = NULL, firstOnly = TRUE, log = TRUE)

`celSetList`	an object of class `AffymetrixCelSetList`
`units`	the units to be extracted. Can be either a numeric vector or a character string with the unitNames as on the appropriate cdf. If not supplied, all units will be returned.
`which`	specify which elements of the celSetList should have data extracted from them. If not supplied, data from all elements of the celSetList will be returned
`firstOnly`	if `firstOnly=TRUE`, only the first cell from each unit will be extracted. If `firstOnly=FALSE` all cells from each unit will be extracted.
`log`	should the data be log-transformed

During the BMEA process, contrast, model parameters & background priors are all saved as AffymetrixCel Files. This enables simple extraction of saved data for any combination of units & files.

Returns either a matrix or array, depending on which data is requested

steveped/BMEA documentation built on May 30, 2019, 5:38 p.m.