steveped/chipExtra: Additional functions for working with ChIP-Seq data

This package builds on existing tools and adds some simple but extremely useful capabilities for working wth ChIP-Seq data. The focus is on detecting differential binding windows/regions. One set of functions focusses on set-operations retaining mcols for GRanges objects, whilst another group of functions are to aid visualisation of results. Coercion to tibble objects is also implemented.

Getting started

Package details

Bioconductor views ChIPSeq Coverage HiC Sequencing
Maintainer
LicenseGPL-3
Version1.9.6
URL https://github.com/smped/extraChIPs
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("steveped/chipExtra")
steveped/chipExtra documentation built on Aug. 1, 2024, 12:33 a.m.